Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SNORD88.1-201ENST00000408684 91 ntBASIC2.81□□□□□ -1.96
MSX2P35548 MIR1185-2-201ENST00000408687 86 ntBASIC2.81□□□□□ -1.96
MSX2P35548 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.81□□□□□ -1.96
MSX2P35548 AC097463.2-201ENST00000421074 142 ntBASIC2.81□□□□□ -1.96
MSX2P35548 AL139281.1-201ENST00000422120 335 ntBASIC2.81□□□□□ -1.96
MSX2P35548 Z98742.2-201ENST00000431564 187 ntBASIC2.81□□□□□ -1.96
MSX2P35548 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC2.81□□□□□ -1.96
MSX2P35548 AC010409.1-201ENST00000487382 476 ntBASIC2.81□□□□□ -1.96
MSX2P35548 SRIP1-201ENST00000489235 288 ntBASIC2.81□□□□□ -1.96
MSX2P35548 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.81□□□□□ -1.96
MSX2P35548 RNU6-1098P-201ENST00000516772 96 ntBASIC2.81□□□□□ -1.96
MSX2P35548 AC109810.1-201ENST00000534066 224 ntBASIC2.81□□□□□ -1.96
MSX2P35548 MIR3684-201ENST00000579779 74 ntBASIC2.81□□□□□ -1.96
MSX2P35548 AC103810.1-201ENST00000579873 453 ntBASIC2.81□□□□□ -1.96
MSX2P35548 AC025754.2-201ENST00000606491 432 ntBASIC2.81□□□□□ -1.96
MSX2P35548 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.81□□□□□ -1.96
MSX2P35548 Y_RNA.802-201ENST00000614892 130 ntBASIC2.81□□□□□ -1.96
MSX2P35548 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.81□□□□□ -1.96
MSX2P35548 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.81□□□□□ -1.96
MSX2P35548 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.8□□□□□ -1.96
MSX2P35548 AL049781.1-201ENST00000623195 3585 ntBASIC2.8□□□□□ -1.96
MSX2P35548 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.8□□□□□ -1.96
MSX2P35548 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
MSX2P35548 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.8□□□□□ -1.96
MSX2P35548 Y_RNA.172-201ENST00000363765 102 ntBASIC2.8□□□□□ -1.96
MSX2P35548 RNU6-969P-201ENST00000383900 105 ntBASIC2.8□□□□□ -1.96
MSX2P35548 MIR627-201ENST00000384979 97 ntBASIC2.8□□□□□ -1.96
MSX2P35548 MIR634-201ENST00000385208 97 ntBASIC2.8□□□□□ -1.96
MSX2P35548 MIR616-201ENST00000385293 97 ntBASIC2.8□□□□□ -1.96
MSX2P35548 AL139095.1-201ENST00000404326 391 ntBASIC2.8□□□□□ -1.96
MSX2P35548 MICF-203ENST00000432679 129 ntBASIC2.8□□□□□ -1.96
MSX2P35548 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.8□□□□□ -1.96
MSX2P35548 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.8□□□□□ -1.96
MSX2P35548 RPS29P2-201ENST00000479278 136 ntBASIC2.8□□□□□ -1.96
MSX2P35548 RNU6-62P-201ENST00000516526 102 ntBASIC2.8□□□□□ -1.96
MSX2P35548 AC022616.8-201ENST00000533569 253 ntBASIC2.8□□□□□ -1.96
MSX2P35548 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.8□□□□□ -1.96
MSX2P35548 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.8□□□□□ -1.96
MSX2P35548 RPL30P11-203ENST00000598995 310 ntBASIC2.8□□□□□ -1.96
MSX2P35548 AC005000.2-201ENST00000605468 310 ntBASIC2.8□□□□□ -1.96
MSX2P35548 MIR3651-201ENST00000630427 90 ntBASIC2.8□□□□□ -1.96
MSX2P35548 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.8□□□□□ -1.96
MSX2P35548 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.8□□□□□ -1.96
MSX2P35548 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
MSX2P35548 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.79□□□□□ -1.96
MSX2P35548 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
MSX2P35548 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
MSX2P35548 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
MSX2P35548 RNU6-1290P-201ENST00000362957 109 ntBASIC2.79□□□□□ -1.96
MSX2P35548 Y_RNA.124-201ENST00000363339 93 ntBASIC2.79□□□□□ -1.96
MSX2P35548 RNU6-461P-201ENST00000364195 107 ntBASIC2.79□□□□□ -1.96
MSX2P35548 SNORA22C-201ENST00000384614 134 ntBASIC2.79□□□□□ -1.96
MSX2P35548 RNU6-1168P-201ENST00000390831 104 ntBASIC2.79□□□□□ -1.96
MSX2P35548 UBBP3-201ENST00000445497 241 ntBASIC2.79□□□□□ -1.96
MSX2P35548 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.79□□□□□ -1.96
MSX2P35548 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC2.79□□□□□ -1.96
MSX2P35548 SNORA70.12-201ENST00000516084 153 ntBASIC2.79□□□□□ -1.96
MSX2P35548 RN7SKP57-201ENST00000517248 293 ntBASIC2.79□□□□□ -1.96
MSX2P35548 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.79□□□□□ -1.96
MSX2P35548 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.79□□□□□ -1.96
MSX2P35548 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.79□□□□□ -1.96
MSX2P35548 MIR548X2-201ENST00000579776 100 ntBASIC2.79□□□□□ -1.96
MSX2P35548 MIR4765-201ENST00000585007 77 ntBASIC2.79□□□□□ -1.96
MSX2P35548 AL365222.1-201ENST00000614661 98 ntBASIC2.79□□□□□ -1.96
MSX2P35548 MIR3658-201ENST00000636291 56 ntBASIC2.79□□□□□ -1.96
MSX2P35548 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.79□□□□□ -1.96
MSX2P35548 AC100821.1-201ENST00000523153 2479 ntBASIC2.79□□□□□ -1.96
MSX2P35548 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
MSX2P35548 SNORD114-7-201ENST00000362520 77 ntBASIC2.78□□□□□ -1.96
MSX2P35548 Y_RNA.111-201ENST00000363248 100 ntBASIC2.78□□□□□ -1.96
MSX2P35548 RNU6-1205P-201ENST00000363625 106 ntBASIC2.78□□□□□ -1.96
MSX2P35548 RNU6-1180P-201ENST00000364935 107 ntBASIC2.78□□□□□ -1.96
MSX2P35548 SNORD50B-201ENST00000364995 70 ntBASIC2.78□□□□□ -1.96
MSX2P35548 SNORA7.4-201ENST00000384249 137 ntBASIC2.78□□□□□ -1.96
MSX2P35548 RNU6-417P-201ENST00000384712 107 ntBASIC2.78□□□□□ -1.96
MSX2P35548 MIR29B2-201ENST00000385055 81 ntBASIC2.78□□□□□ -1.96
MSX2P35548 RNU6-1154P-201ENST00000391001 104 ntBASIC2.78□□□□□ -1.96
MSX2P35548 FO393413.1-201ENST00000402892 195 ntBASIC2.78□□□□□ -1.96
MSX2P35548 AL355796.1-201ENST00000406706 323 ntBASIC2.78□□□□□ -1.96
MSX2P35548 RNU6-735P-201ENST00000410612 107 ntBASIC2.78□□□□□ -1.96
MSX2P35548 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.78□□□□□ -1.96
MSX2P35548 AC245047.8-201ENST00000456455 284 ntBASIC2.78□□□□□ -1.96
MSX2P35548 RN7SL863P-201ENST00000462370 296 ntBASIC2.78□□□□□ -1.96
MSX2P35548 RN7SL499P-201ENST00000481141 276 ntBASIC2.78□□□□□ -1.96
MSX2P35548 AC107027.2-201ENST00000512197 115 ntBASIC2.78□□□□□ -1.96
MSX2P35548 RNU6-313P-201ENST00000516317 112 ntBASIC2.78□□□□□ -1.96
MSX2P35548 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.78□□□□□ -1.96
MSX2P35548 MIR5688-201ENST00000580619 83 ntBASIC2.78□□□□□ -1.96
MSX2P35548 DNAJC19P2-201ENST00000593340 302 ntBASIC2.78□□□□□ -1.96
MSX2P35548 AL391903.3-201ENST00000612158 163 ntBASIC2.78□□□□□ -1.96
MSX2P35548 AC012640.5-201ENST00000623897 319 ntBASIC2.78□□□□□ -1.96
MSX2P35548 AL365361.1-201ENST00000566942 3481 ntBASIC2.78□□□□□ -1.96
MSX2P35548 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.77□□□□□ -1.97
MSX2P35548 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
MSX2P35548 SNORD56.5-201ENST00000364281 72 ntBASIC2.77□□□□□ -1.97
MSX2P35548 RNU4-11P-201ENST00000365287 132 ntBASIC2.77□□□□□ -1.97
MSX2P35548 SNORA48.2-201ENST00000390926 124 ntBASIC2.77□□□□□ -1.97
MSX2P35548 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC2.77□□□□□ -1.97
MSX2P35548 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC2.77□□□□□ -1.97
MSX2P35548 RPL23AP7-203ENST00000449021 469 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 153.6 ms