Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 IPO7P1-201ENST00000442031 636 ntBASIC2.09□□□□□ -2.07
HOXC9P31274 AC016717.1-201ENST00000448918 286 ntBASIC2.09□□□□□ -2.07
HOXC9P31274 AC245102.2-201ENST00000448956 180 ntBASIC2.09□□□□□ -2.07
HOXC9P31274 HMGN2P9-201ENST00000476875 229 ntBASIC2.09□□□□□ -2.07
HOXC9P31274 RNU6-107P-201ENST00000516643 102 ntBASIC2.09□□□□□ -2.07
HOXC9P31274 RNA5SP137-201ENST00000516833 135 ntBASIC2.09□□□□□ -2.07
HOXC9P31274 RN7SKP295-201ENST00000517264 153 ntBASIC2.09□□□□□ -2.07
HOXC9P31274 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.09□□□□□ -2.07
HOXC9P31274 AC015720.1-201ENST00000565251 277 ntBASIC2.09□□□□□ -2.07
HOXC9P31274 AC068205.3-201ENST00000636385 468 ntBASIC2.09□□□□□ -2.07
HOXC9P31274 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.08□□□□□ -2.08
HOXC9P31274 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
HOXC9P31274 RNU6-708P-201ENST00000384217 107 ntBASIC2.08□□□□□ -2.08
HOXC9P31274 AC004965.1-201ENST00000413033 213 ntBASIC2.08□□□□□ -2.08
HOXC9P31274 AL354751.2-201ENST00000415471 210 ntBASIC2.08□□□□□ -2.08
HOXC9P31274 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.08□□□□□ -2.08
HOXC9P31274 UQCRBP2-201ENST00000447827 297 ntBASIC2.08□□□□□ -2.08
HOXC9P31274 Y_RNA.631-201ENST00000459607 101 ntBASIC2.08□□□□□ -2.08
HOXC9P31274 AC010531.2-201ENST00000465012 153 ntBASIC2.08□□□□□ -2.08
HOXC9P31274 RNU4-77P-201ENST00000516692 156 ntBASIC2.08□□□□□ -2.08
HOXC9P31274 AP005660.1-201ENST00000522972 293 ntBASIC2.08□□□□□ -2.08
HOXC9P31274 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
HOXC9P31274 HSBP1P1-201ENST00000555205 166 ntBASIC2.08□□□□□ -2.08
HOXC9P31274 AL357075.2-201ENST00000614906 189 ntBASIC2.08□□□□□ -2.08
HOXC9P31274 AL590240.4-201ENST00000616908 390 ntBASIC2.08□□□□□ -2.08
HOXC9P31274 AC130454.1-201ENST00000622948 401 ntBASIC2.08□□□□□ -2.08
HOXC9P31274 AC091925.1-201ENST00000623204 462 ntBASIC2.08□□□□□ -2.08
HOXC9P31274 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.08□□□□□ -2.08
HOXC9P31274 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
HOXC9P31274 Y_RNA.216-201ENST00000364205 93 ntBASIC2.07□□□□□ -2.08
HOXC9P31274 SNORA67.2-201ENST00000384300 149 ntBASIC2.07□□□□□ -2.08
HOXC9P31274 RNU6-160P-201ENST00000384591 107 ntBASIC2.07□□□□□ -2.08
HOXC9P31274 MIR586-201ENST00000385035 97 ntBASIC2.07□□□□□ -2.08
HOXC9P31274 AL078595.1-201ENST00000404458 226 ntBASIC2.07□□□□□ -2.08
HOXC9P31274 MIR548P-201ENST00000408336 84 ntBASIC2.07□□□□□ -2.08
HOXC9P31274 MCFD2P1-201ENST00000417812 300 ntBASIC2.07□□□□□ -2.08
HOXC9P31274 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC2.07□□□□□ -2.08
HOXC9P31274 PMCHL1-202ENST00000423102 261 ntBASIC2.07□□□□□ -2.08
HOXC9P31274 AL160004.2-201ENST00000432935 350 ntBASIC2.07□□□□□ -2.08
HOXC9P31274 AC074290.1-201ENST00000448883 135 ntBASIC2.07□□□□□ -2.08
HOXC9P31274 AC007395.1-201ENST00000451333 677 ntBASIC2.07□□□□□ -2.08
HOXC9P31274 AC114982.1-201ENST00000469402 321 ntBASIC2.07□□□□□ -2.08
HOXC9P31274 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.07□□□□□ -2.08
HOXC9P31274 VN1R91P-201ENST00000594377 169 ntBASIC2.07□□□□□ -2.08
HOXC9P31274 AC078899.2-201ENST00000595282 212 ntBASIC2.07□□□□□ -2.08
HOXC9P31274 MIR6840-201ENST00000611937 71 ntBASIC2.07□□□□□ -2.08
HOXC9P31274 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2.07□□□□□ -2.08
HOXC9P31274 AL606534.2-204ENST00000635008 178 ntBASIC2.07□□□□□ -2.08
HOXC9P31274 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC2.07□□□□□ -2.08
HOXC9P31274 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
HOXC9P31274 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.06□□□□□ -2.08
HOXC9P31274 MIR337-201ENST00000362281 93 ntBASIC2.06□□□□□ -2.08
HOXC9P31274 Y_RNA.128-201ENST00000363391 112 ntBASIC2.06□□□□□ -2.08
HOXC9P31274 RNU6-694P-201ENST00000364071 147 ntBASIC2.06□□□□□ -2.08
HOXC9P31274 SNORD114-6-201ENST00000364393 72 ntBASIC2.06□□□□□ -2.08
HOXC9P31274 RNU6-1164P-201ENST00000364428 107 ntBASIC2.06□□□□□ -2.08
HOXC9P31274 RNU1-115P-201ENST00000365329 160 ntBASIC2.06□□□□□ -2.08
HOXC9P31274 MIR518A2-201ENST00000384966 87 ntBASIC2.06□□□□□ -2.08
HOXC9P31274 SNORA67.6-201ENST00000391093 99 ntBASIC2.06□□□□□ -2.08
HOXC9P31274 HMGN2P39-201ENST00000398005 273 ntBASIC2.06□□□□□ -2.08
HOXC9P31274 SNORD12B-201ENST00000410433 91 ntBASIC2.06□□□□□ -2.08
HOXC9P31274 MTND1P14-201ENST00000427400 950 ntBASIC2.06□□□□□ -2.08
HOXC9P31274 MIR2355-201ENST00000517199 87 ntBASIC2.06□□□□□ -2.08
HOXC9P31274 AC007229.1-201ENST00000590455 412 ntBASIC2.06□□□□□ -2.08
HOXC9P31274 SNORD58B-201ENST00000607313 66 ntBASIC2.06□□□□□ -2.08
HOXC9P31274 AC083806.3-201ENST00000614016 455 ntBASIC2.06□□□□□ -2.08
HOXC9P31274 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.06□□□□□ -2.08
HOXC9P31274 AC008873.1-201ENST00000625051 138 ntBASIC2.06□□□□□ -2.08
HOXC9P31274 AC134503.1-201ENST00000633048 54 ntBASIC2.06□□□□□ -2.08
HOXC9P31274 LINC02555-201ENST00000563933 1951 ntBASIC2.06□□□□□ -2.08
HOXC9P31274 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.05□□□□□ -2.08
HOXC9P31274 AL596028.1-201ENST00000326971 197 ntBASIC2.05□□□□□ -2.08
HOXC9P31274 MIR340-201ENST00000362125 95 ntBASIC2.05□□□□□ -2.08
HOXC9P31274 RNU6-23P-201ENST00000363283 107 ntBASIC2.05□□□□□ -2.08
HOXC9P31274 MIR517C-201ENST00000385103 95 ntBASIC2.05□□□□□ -2.08
HOXC9P31274 MIR29C-201ENST00000385231 88 ntBASIC2.05□□□□□ -2.08
HOXC9P31274 MIR548B-201ENST00000385247 97 ntBASIC2.05□□□□□ -2.08
HOXC9P31274 RNU6-57P-201ENST00000411348 103 ntBASIC2.05□□□□□ -2.08
HOXC9P31274 MTND4P19-201ENST00000446659 478 ntBASIC2.05□□□□□ -2.08
HOXC9P31274 RNU7-57P-201ENST00000459540 60 ntBASIC2.05□□□□□ -2.08
HOXC9P31274 RN7SL274P-201ENST00000492268 272 ntBASIC2.05□□□□□ -2.08
HOXC9P31274 RN7SKP49-201ENST00000516675 260 ntBASIC2.05□□□□□ -2.08
HOXC9P31274 SNORA31.25-201ENST00000517242 134 ntBASIC2.05□□□□□ -2.08
HOXC9P31274 AK6P2-201ENST00000549020 471 ntBASIC2.05□□□□□ -2.08
HOXC9P31274 AL442163.3-201ENST00000554110 156 ntBASIC2.05□□□□□ -2.08
HOXC9P31274 AC024614.2-201ENST00000577584 372 ntBASIC2.05□□□□□ -2.08
HOXC9P31274 MIR5188-201ENST00000583467 113 ntBASIC2.05□□□□□ -2.08
HOXC9P31274 AC044792.1-201ENST00000593294 196 ntBASIC2.05□□□□□ -2.08
HOXC9P31274 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC2.05□□□□□ -2.08
HOXC9P31274 AL162373.1-201ENST00000620433 407 ntBASIC2.05□□□□□ -2.08
HOXC9P31274 Y_RNA.148-201ENST00000363557 117 ntBASIC2.04□□□□□ -2.08
HOXC9P31274 RNU6-1145P-201ENST00000384246 107 ntBASIC2.04□□□□□ -2.08
HOXC9P31274 RNU6-975P-201ENST00000384296 105 ntBASIC2.04□□□□□ -2.08
HOXC9P31274 MIR597-201ENST00000384968 97 ntBASIC2.04□□□□□ -2.08
HOXC9P31274 RNU11-3P-201ENST00000391111 133 ntBASIC2.04□□□□□ -2.08
HOXC9P31274 AC091812.1-201ENST00000432235 1948 ntBASIC2.04□□□□□ -2.08
HOXC9P31274 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC2.04□□□□□ -2.08
HOXC9P31274 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC2.04□□□□□ -2.08
HOXC9P31274 SNORA40.9-201ENST00000515895 93 ntBASIC2.04□□□□□ -2.08
HOXC9P31274 MIR4529-201ENST00000578110 78 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms