Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
HOXD9P28356 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.45□□□□□ -2.02
HOXD9P28356 MIR411-201ENST00000362239 96 ntBASIC2.45□□□□□ -2.02
HOXD9P28356 RNU6-727P-201ENST00000363592 107 ntBASIC2.45□□□□□ -2.02
HOXD9P28356 SNORD32B-201ENST00000364460 84 ntBASIC2.45□□□□□ -2.02
HOXD9P28356 Y_RNA.292-201ENST00000364904 97 ntBASIC2.45□□□□□ -2.02
HOXD9P28356 SNORA67.2-201ENST00000384300 149 ntBASIC2.45□□□□□ -2.02
HOXD9P28356 Y_RNA.626-201ENST00000411288 95 ntBASIC2.45□□□□□ -2.02
HOXD9P28356 NDUFB4P10-201ENST00000452541 359 ntBASIC2.45□□□□□ -2.02
HOXD9P28356 RPL23AP3-201ENST00000453844 468 ntBASIC2.45□□□□□ -2.02
HOXD9P28356 SNORD2.1-201ENST00000458762 69 ntBASIC2.45□□□□□ -2.02
HOXD9P28356 RNU7-26P-201ENST00000458980 63 ntBASIC2.45□□□□□ -2.02
HOXD9P28356 TRBV12-1-201ENST00000479785 344 ntBASIC2.45□□□□□ -2.02
HOXD9P28356 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.45□□□□□ -2.02
HOXD9P28356 RNU2-44P-201ENST00000516795 194 ntBASIC2.45□□□□□ -2.02
HOXD9P28356 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.45□□□□□ -2.02
HOXD9P28356 AL365434.2-201ENST00000607979 234 ntBASIC2.45□□□□□ -2.02
HOXD9P28356 AC067747.1-201ENST00000608026 250 ntBASIC2.45□□□□□ -2.02
HOXD9P28356 AC068205.3-201ENST00000636385 468 ntBASIC2.45□□□□□ -2.02
HOXD9P28356 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
HOXD9P28356 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.44□□□□□ -2.02
HOXD9P28356 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.44□□□□□ -2.02
HOXD9P28356 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
HOXD9P28356 snoU2_19.1-201ENST00000362361 80 ntBASIC2.44□□□□□ -2.02
HOXD9P28356 Y_RNA.217-201ENST00000364214 105 ntBASIC2.44□□□□□ -2.02
HOXD9P28356 Y_RNA.415-201ENST00000384012 112 ntBASIC2.44□□□□□ -2.02
HOXD9P28356 RNU6-1072P-201ENST00000384703 107 ntBASIC2.44□□□□□ -2.02
HOXD9P28356 RNU6-443P-201ENST00000384780 107 ntBASIC2.44□□□□□ -2.02
HOXD9P28356 RNA5SP504-201ENST00000410676 117 ntBASIC2.44□□□□□ -2.02
HOXD9P28356 RNU6-651P-201ENST00000411040 105 ntBASIC2.44□□□□□ -2.02
HOXD9P28356 RNU2-61P-201ENST00000411069 191 ntBASIC2.44□□□□□ -2.02
HOXD9P28356 SUMO1P3-201ENST00000439961 304 ntBASIC2.44□□□□□ -2.02
HOXD9P28356 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC2.44□□□□□ -2.02
HOXD9P28356 Y_RNA.641-201ENST00000459414 105 ntBASIC2.44□□□□□ -2.02
HOXD9P28356 RNU2-12P-201ENST00000517216 168 ntBASIC2.44□□□□□ -2.02
HOXD9P28356 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.44□□□□□ -2.02
HOXD9P28356 RPL21P9-201ENST00000556149 474 ntBASIC2.44□□□□□ -2.02
HOXD9P28356 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.44□□□□□ -2.02
HOXD9P28356 MIR5006-201ENST00000583027 110 ntBASIC2.44□□□□□ -2.02
HOXD9P28356 Z83818.1-201ENST00000603584 150 ntBASIC2.44□□□□□ -2.02
HOXD9P28356 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
HOXD9P28356 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
HOXD9P28356 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
HOXD9P28356 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
HOXD9P28356 RNU6-454P-201ENST00000364292 107 ntBASIC2.43□□□□□ -2.02
HOXD9P28356 SNORD114-30-201ENST00000364448 72 ntBASIC2.43□□□□□ -2.02
HOXD9P28356 SNORA18.2-201ENST00000383865 132 ntBASIC2.43□□□□□ -2.02
HOXD9P28356 RNU6-1289P-201ENST00000384431 106 ntBASIC2.43□□□□□ -2.02
HOXD9P28356 MIR29B2-201ENST00000385055 81 ntBASIC2.43□□□□□ -2.02
HOXD9P28356 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
HOXD9P28356 Y_RNA.590-201ENST00000410140 107 ntBASIC2.43□□□□□ -2.02
HOXD9P28356 OOSP1P1-201ENST00000423265 274 ntBASIC2.43□□□□□ -2.02
HOXD9P28356 RNU7-120P-201ENST00000459334 63 ntBASIC2.43□□□□□ -2.02
HOXD9P28356 RNU1-41P-201ENST00000516161 162 ntBASIC2.43□□□□□ -2.02
HOXD9P28356 RNU6-191P-201ENST00000516295 94 ntBASIC2.43□□□□□ -2.02
HOXD9P28356 RNU1-48P-201ENST00000516400 162 ntBASIC2.43□□□□□ -2.02
HOXD9P28356 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.43□□□□□ -2.02
HOXD9P28356 AC007536.1-201ENST00000533382 349 ntBASIC2.43□□□□□ -2.02
HOXD9P28356 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.43□□□□□ -2.02
HOXD9P28356 RPL30P11-203ENST00000598995 310 ntBASIC2.43□□□□□ -2.02
HOXD9P28356 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.43□□□□□ -2.02
HOXD9P28356 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
HOXD9P28356 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
HOXD9P28356 ZNF658B-202ENST00000615961 3375 ntBASIC2.43□□□□□ -2.02
HOXD9P28356 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.42□□□□□ -2.02
HOXD9P28356 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.42□□□□□ -2.02
HOXD9P28356 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.42□□□□□ -2.02
HOXD9P28356 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.42□□□□□ -2.02
HOXD9P28356 MIR21-201ENST00000362134 72 ntBASIC2.42□□□□□ -2.02
HOXD9P28356 SNORA38-201ENST00000363946 132 ntBASIC2.42□□□□□ -2.02
HOXD9P28356 RNU6-886P-201ENST00000384319 105 ntBASIC2.42□□□□□ -2.02
HOXD9P28356 SNORA26.7-201ENST00000391288 122 ntBASIC2.42□□□□□ -2.02
HOXD9P28356 Y_RNA.793-201ENST00000411222 111 ntBASIC2.42□□□□□ -2.02
HOXD9P28356 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.42□□□□□ -2.02
HOXD9P28356 RPL39P40-201ENST00000445481 146 ntBASIC2.42□□□□□ -2.02
HOXD9P28356 Y_RNA.638-201ENST00000459374 113 ntBASIC2.42□□□□□ -2.02
HOXD9P28356 RN7SL499P-201ENST00000481141 276 ntBASIC2.42□□□□□ -2.02
HOXD9P28356 AC140059.1-201ENST00000489238 361 ntBASIC2.42□□□□□ -2.02
HOXD9P28356 SNORD116-28-201ENST00000516123 91 ntBASIC2.42□□□□□ -2.02
HOXD9P28356 RNU6-155P-201ENST00000516347 100 ntBASIC2.42□□□□□ -2.02
HOXD9P28356 RNA5SP281-201ENST00000516504 135 ntBASIC2.42□□□□□ -2.02
HOXD9P28356 AL512605.2-201ENST00000592972 256 ntBASIC2.42□□□□□ -2.02
HOXD9P28356 AC008873.1-201ENST00000625051 138 ntBASIC2.42□□□□□ -2.02
HOXD9P28356 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.42□□□□□ -2.02
HOXD9P28356 AC080100.1-201ENST00000624239 5356 ntBASIC2.42□□□□□ -2.02
HOXD9P28356 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.41□□□□□ -2.02
HOXD9P28356 U3.8-201ENST00000363675 217 ntBASIC2.41□□□□□ -2.02
HOXD9P28356 DEFA7P-201ENST00000382676 285 ntBASIC2.41□□□□□ -2.02
HOXD9P28356 RNU6-1248P-201ENST00000391096 64 ntBASIC2.41□□□□□ -2.02
HOXD9P28356 SNORA12-201ENST00000391162 147 ntBASIC2.41□□□□□ -2.02
HOXD9P28356 PCNPP3-201ENST00000393579 471 ntBASIC2.41□□□□□ -2.02
HOXD9P28356 Z98742.3-201ENST00000418637 326 ntBASIC2.41□□□□□ -2.02
HOXD9P28356 SUMO1P2-201ENST00000452524 304 ntBASIC2.41□□□□□ -2.02
HOXD9P28356 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.41□□□□□ -2.02
HOXD9P28356 RNU6-436P-201ENST00000516171 114 ntBASIC2.41□□□□□ -2.02
HOXD9P28356 HSPE1P18-201ENST00000517602 280 ntBASIC2.41□□□□□ -2.02
HOXD9P28356 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.41□□□□□ -2.02
HOXD9P28356 AC006380.1-201ENST00000603598 186 ntBASIC2.41□□□□□ -2.02
HOXD9P28356 AC073349.3-201ENST00000617616 186 ntBASIC2.41□□□□□ -2.02
HOXD9P28356 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 190.9 ms