Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RNU4-13P-201ENST00000364019 141 ntBASIC1.59□□□□□ -2.15
BDNFP23560 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
BDNFP23560 MIR1304-201ENST00000408243 91 ntBASIC1.59□□□□□ -2.15
BDNFP23560 RNU6-955P-201ENST00000410497 104 ntBASIC1.59□□□□□ -2.15
BDNFP23560 MTND3P23-201ENST00000431980 347 ntBASIC1.59□□□□□ -2.15
BDNFP23560 AL445305.1-201ENST00000432577 575 ntBASIC1.59□□□□□ -2.15
BDNFP23560 MRPS10P1-201ENST00000448483 130 ntBASIC1.59□□□□□ -2.15
BDNFP23560 RPL39P38-201ENST00000467018 153 ntBASIC1.59□□□□□ -2.15
BDNFP23560 RPS27P22-201ENST00000478056 241 ntBASIC1.59□□□□□ -2.15
BDNFP23560 AC046134.1-201ENST00000514454 666 ntBASIC1.59□□□□□ -2.15
BDNFP23560 CYP3A52P-201ENST00000563326 91 ntBASIC1.59□□□□□ -2.15
BDNFP23560 MZT1P2-201ENST00000604387 248 ntBASIC1.59□□□□□ -2.15
BDNFP23560 uc_338.5-201ENST00000611839 155 ntBASIC1.59□□□□□ -2.15
BDNFP23560 AC073349.3-201ENST00000617616 186 ntBASIC1.59□□□□□ -2.15
BDNFP23560 Y_RNA.3-201ENST00000362331 103 ntBASIC1.58□□□□□ -2.16
BDNFP23560 MIR618-201ENST00000385287 98 ntBASIC1.58□□□□□ -2.16
BDNFP23560 AP1B1P2-201ENST00000416196 106 ntBASIC1.58□□□□□ -2.16
BDNFP23560 USP9YP30-201ENST00000430729 455 ntBASIC1.58□□□□□ -2.16
BDNFP23560 RNU7-95P-201ENST00000459222 64 ntBASIC1.58□□□□□ -2.16
BDNFP23560 AC093023.1-201ENST00000547375 507 ntBASIC1.58□□□□□ -2.16
BDNFP23560 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.58□□□□□ -2.16
BDNFP23560 MIR3688-2-201ENST00000636963 87 ntBASIC1.58□□□□□ -2.16
BDNFP23560 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
BDNFP23560 AC018630.2-201ENST00000534866 2403 ntBASIC1.58□□□□□ -2.16
BDNFP23560 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
BDNFP23560 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.58□□□□□ -2.16
BDNFP23560 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
BDNFP23560 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
BDNFP23560 MTCO3P19-201ENST00000415864 321 ntBASIC1.57□□□□□ -2.16
BDNFP23560 AL354695.1-201ENST00000427935 228 ntBASIC1.57□□□□□ -2.16
BDNFP23560 SNORD65B-201ENST00000459126 73 ntBASIC1.57□□□□□ -2.16
BDNFP23560 RNU6-1088P-201ENST00000516850 104 ntBASIC1.57□□□□□ -2.16
BDNFP23560 SNORA31.24-201ENST00000517232 57 ntBASIC1.57□□□□□ -2.16
BDNFP23560 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.57□□□□□ -2.16
BDNFP23560 SUMO2P16-201ENST00000519475 264 ntBASIC1.57□□□□□ -2.16
BDNFP23560 DNAJC19P9-201ENST00000555084 351 ntBASIC1.57□□□□□ -2.16
BDNFP23560 MIR3664-201ENST00000579074 99 ntBASIC1.57□□□□□ -2.16
BDNFP23560 AL512598.1-201ENST00000610158 273 ntBASIC1.57□□□□□ -2.16
BDNFP23560 AC090517.2-201ENST00000614966 680 ntBASIC1.57□□□□□ -2.16
BDNFP23560 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.57□□□□□ -2.16
BDNFP23560 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.57□□□□□ -2.16
BDNFP23560 Y_RNA.338-201ENST00000365320 114 ntBASIC1.56□□□□□ -2.16
BDNFP23560 RNU6-1264P-201ENST00000383891 107 ntBASIC1.56□□□□□ -2.16
BDNFP23560 RNU6-281P-201ENST00000384212 103 ntBASIC1.56□□□□□ -2.16
BDNFP23560 RNU6-1215P-201ENST00000384441 102 ntBASIC1.56□□□□□ -2.16
BDNFP23560 AC005002.2-201ENST00000438228 269 ntBASIC1.56□□□□□ -2.16
BDNFP23560 AC023790.1-201ENST00000482174 347 ntBASIC1.56□□□□□ -2.16
BDNFP23560 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.56□□□□□ -2.16
BDNFP23560 SNORA31.10-201ENST00000516482 106 ntBASIC1.56□□□□□ -2.16
BDNFP23560 AK6P2-201ENST00000549020 471 ntBASIC1.56□□□□□ -2.16
BDNFP23560 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.56□□□□□ -2.16
BDNFP23560 SNORD3E-202ENST00000627253 216 ntBASIC1.56□□□□□ -2.16
BDNFP23560 FGF7P8-201ENST00000402994 292 ntBASIC1.55□□□□□ -2.16
BDNFP23560 MTCYBP10-201ENST00000424905 650 ntBASIC1.55□□□□□ -2.16
BDNFP23560 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.55□□□□□ -2.16
BDNFP23560 AL606517.2-201ENST00000442855 241 ntBASIC1.55□□□□□ -2.16
BDNFP23560 UQCRBP2-201ENST00000447827 297 ntBASIC1.55□□□□□ -2.16
BDNFP23560 RNU6-1016P-201ENST00000516689 94 ntBASIC1.55□□□□□ -2.16
BDNFP23560 RNU6-307P-201ENST00000516743 106 ntBASIC1.55□□□□□ -2.16
BDNFP23560 RNU7-28P-201ENST00000516759 62 ntBASIC1.55□□□□□ -2.16
BDNFP23560 FRG2DP-202ENST00000566967 323 ntBASIC1.55□□□□□ -2.16
BDNFP23560 AL021879.1-201ENST00000611756 288 ntBASIC1.55□□□□□ -2.16
BDNFP23560 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
BDNFP23560 Y_RNA.6-201ENST00000362350 114 ntBASIC1.54□□□□□ -2.16
BDNFP23560 SNORA70.7-201ENST00000384159 133 ntBASIC1.54□□□□□ -2.16
BDNFP23560 MIR190B-201ENST00000401119 79 ntBASIC1.54□□□□□ -2.16
BDNFP23560 SUMO1P2-201ENST00000452524 304 ntBASIC1.54□□□□□ -2.16
BDNFP23560 AC010469.2-201ENST00000496412 480 ntBASIC1.54□□□□□ -2.16
BDNFP23560 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.54□□□□□ -2.16
BDNFP23560 AC074133.1-201ENST00000515696 183 ntBASIC1.54□□□□□ -2.16
BDNFP23560 Y_RNA.675-201ENST00000516389 149 ntBASIC1.54□□□□□ -2.16
BDNFP23560 RNU7-40P-201ENST00000516397 64 ntBASIC1.54□□□□□ -2.16
BDNFP23560 RNU7-128P-201ENST00000517247 62 ntBASIC1.54□□□□□ -2.16
BDNFP23560 AC018638.8-201ENST00000588755 281 ntBASIC1.54□□□□□ -2.16
BDNFP23560 AL390123.1-201ENST00000603216 237 ntBASIC1.54□□□□□ -2.16
BDNFP23560 AL513534.2-201ENST00000603836 250 ntBASIC1.54□□□□□ -2.16
BDNFP23560 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
BDNFP23560 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
BDNFP23560 Y_RNA.106-201ENST00000363189 100 ntBASIC1.53□□□□□ -2.16
BDNFP23560 Y_RNA.301-201ENST00000364990 103 ntBASIC1.53□□□□□ -2.16
BDNFP23560 Y_RNA.364-201ENST00000365532 101 ntBASIC1.53□□□□□ -2.16
BDNFP23560 SNORD115-47-201ENST00000391226 86 ntBASIC1.53□□□□□ -2.16
BDNFP23560 MIR1277-201ENST00000408536 78 ntBASIC1.53□□□□□ -2.16
BDNFP23560 AC074085.1-201ENST00000413598 418 ntBASIC1.53□□□□□ -2.16
BDNFP23560 RPL23AP36-201ENST00000413895 458 ntBASIC1.53□□□□□ -2.16
BDNFP23560 MTND5P16-201ENST00000460269 1703 ntBASIC1.53□□□□□ -2.16
BDNFP23560 RPS29P25-201ENST00000481709 171 ntBASIC1.53□□□□□ -2.16
BDNFP23560 RNU4-49P-201ENST00000516080 140 ntBASIC1.53□□□□□ -2.16
BDNFP23560 RNU1-92P-201ENST00000517017 135 ntBASIC1.53□□□□□ -2.16
BDNFP23560 AC091144.1-201ENST00000519573 138 ntBASIC1.53□□□□□ -2.16
BDNFP23560 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.53□□□□□ -2.16
BDNFP23560 MIR4498-201ENST00000577599 66 ntBASIC1.53□□□□□ -2.16
BDNFP23560 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.53□□□□□ -2.16
BDNFP23560 ZNF209P-201ENST00000593450 2304 ntBASIC1.53□□□□□ -2.16
BDNFP23560 AC018462.2-201ENST00000605375 395 ntBASIC1.53□□□□□ -2.16
BDNFP23560 AC016727.1-205ENST00000605437 569 ntBASIC1.53□□□□□ -2.16
BDNFP23560 snoU13.31-201ENST00000607291 104 ntBASIC1.53□□□□□ -2.16
BDNFP23560 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.53□□□□□ -2.16
BDNFP23560 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
BDNFP23560 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 185.2 ms