Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RNA5SP137-201ENST00000516833 135 ntBASIC1.96□□□□□ -2.1
MSH3P20585 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.96□□□□□ -2.1
MSH3P20585 MIR3935-201ENST00000583472 104 ntBASIC1.96□□□□□ -2.1
MSH3P20585 AC078899.2-201ENST00000595282 212 ntBASIC1.96□□□□□ -2.1
MSH3P20585 AL355297.3-201ENST00000604082 446 ntBASIC1.96□□□□□ -2.1
MSH3P20585 AC025754.2-201ENST00000606491 432 ntBASIC1.96□□□□□ -2.1
MSH3P20585 AL021879.1-201ENST00000611756 288 ntBASIC1.96□□□□□ -2.1
MSH3P20585 PART1_1.1-201ENST00000611761 217 ntBASIC1.96□□□□□ -2.1
MSH3P20585 SDR42E1P4-201ENST00000620894 481 ntBASIC1.96□□□□□ -2.1
MSH3P20585 uc_338.20-201ENST00000621563 178 ntBASIC1.96□□□□□ -2.1
MSH3P20585 AL078596.1-201ENST00000624856 447 ntBASIC1.96□□□□□ -2.1
MSH3P20585 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
MSH3P20585 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
MSH3P20585 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.95□□□□□ -2.1
MSH3P20585 MIR340-201ENST00000362125 95 ntBASIC1.95□□□□□ -2.1
MSH3P20585 RNU6-961P-201ENST00000363893 105 ntBASIC1.95□□□□□ -2.1
MSH3P20585 Y_RNA.498-201ENST00000384460 102 ntBASIC1.95□□□□□ -2.1
MSH3P20585 MIR548B-201ENST00000385247 97 ntBASIC1.95□□□□□ -2.1
MSH3P20585 MIR1262-201ENST00000408276 93 ntBASIC1.95□□□□□ -2.1
MSH3P20585 RNU2-2P-201ENST00000410396 191 ntBASIC1.95□□□□□ -2.1
MSH3P20585 RNU6-130P-201ENST00000411112 103 ntBASIC1.95□□□□□ -2.1
MSH3P20585 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.95□□□□□ -2.1
MSH3P20585 AC055731.1-201ENST00000474387 401 ntBASIC1.95□□□□□ -2.1
MSH3P20585 RNU6-327P-201ENST00000516270 127 ntBASIC1.95□□□□□ -2.1
MSH3P20585 Y_RNA.720-201ENST00000517166 92 ntBASIC1.95□□□□□ -2.1
MSH3P20585 AC087441.2-201ENST00000529141 262 ntBASIC1.95□□□□□ -2.1
MSH3P20585 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.95□□□□□ -2.1
MSH3P20585 MIR5089-201ENST00000580047 84 ntBASIC1.95□□□□□ -2.1
MSH3P20585 MIR4753-201ENST00000585119 83 ntBASIC1.95□□□□□ -2.1
MSH3P20585 AL031274.2-201ENST00000599419 203 ntBASIC1.95□□□□□ -2.1
MSH3P20585 U2.15-201ENST00000611544 191 ntBASIC1.95□□□□□ -2.1
MSH3P20585 U2.16-201ENST00000613119 191 ntBASIC1.95□□□□□ -2.1
MSH3P20585 U2.12-201ENST00000613778 191 ntBASIC1.95□□□□□ -2.1
MSH3P20585 U2.20-201ENST00000613956 192 ntBASIC1.95□□□□□ -2.1
MSH3P20585 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.95□□□□□ -2.1
MSH3P20585 U2.9-201ENST00000615427 191 ntBASIC1.95□□□□□ -2.1
MSH3P20585 U2.11-201ENST00000616345 191 ntBASIC1.95□□□□□ -2.1
MSH3P20585 U2.2-201ENST00000616535 191 ntBASIC1.95□□□□□ -2.1
MSH3P20585 U2.3-201ENST00000617785 191 ntBASIC1.95□□□□□ -2.1
MSH3P20585 U2.19-201ENST00000618602 191 ntBASIC1.95□□□□□ -2.1
MSH3P20585 RNU2-1-201ENST00000618664 191 ntBASIC1.95□□□□□ -2.1
MSH3P20585 U2.6-201ENST00000619225 191 ntBASIC1.95□□□□□ -2.1
MSH3P20585 U2.5-201ENST00000619465 191 ntBASIC1.95□□□□□ -2.1
MSH3P20585 U2.10-201ENST00000620268 191 ntBASIC1.95□□□□□ -2.1
MSH3P20585 AC091932.3-201ENST00000624223 323 ntBASIC1.95□□□□□ -2.1
MSH3P20585 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
MSH3P20585 HMGN2P39-201ENST00000398005 273 ntBASIC1.94□□□□□ -2.1
MSH3P20585 AL079342.1-201ENST00000401460 267 ntBASIC1.94□□□□□ -2.1
MSH3P20585 AC019129.1-201ENST00000403786 261 ntBASIC1.94□□□□□ -2.1
MSH3P20585 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.94□□□□□ -2.1
MSH3P20585 MTCO1P44-201ENST00000441935 243 ntBASIC1.94□□□□□ -2.1
MSH3P20585 AC010655.3-201ENST00000478818 450 ntBASIC1.94□□□□□ -2.1
MSH3P20585 RNU6-408P-201ENST00000515910 100 ntBASIC1.94□□□□□ -2.1
MSH3P20585 RNU2-19P-201ENST00000517288 84 ntBASIC1.94□□□□□ -2.1
MSH3P20585 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.94□□□□□ -2.1
MSH3P20585 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.94□□□□□ -2.1
MSH3P20585 AC008737.2-201ENST00000599446 118 ntBASIC1.94□□□□□ -2.1
MSH3P20585 RAC1P9-201ENST00000604990 392 ntBASIC1.94□□□□□ -2.1
MSH3P20585 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.94□□□□□ -2.1
MSH3P20585 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.94□□□□□ -2.1
MSH3P20585 ZNF355P-201ENST00000427301 3216 ntBASIC1.93□□□□□ -2.1
MSH3P20585 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
MSH3P20585 MIR410-201ENST00000362222 80 ntBASIC1.93□□□□□ -2.1
MSH3P20585 SNORD114-1-201ENST00000362705 72 ntBASIC1.93□□□□□ -2.1
MSH3P20585 RNU6-975P-201ENST00000384296 105 ntBASIC1.93□□□□□ -2.1
MSH3P20585 AC073910.1-201ENST00000445047 438 ntBASIC1.93□□□□□ -2.1
MSH3P20585 RNU6-625P-201ENST00000459412 107 ntBASIC1.93□□□□□ -2.1
MSH3P20585 RNU7-57P-201ENST00000459540 60 ntBASIC1.93□□□□□ -2.1
MSH3P20585 AC114982.1-201ENST00000469402 321 ntBASIC1.93□□□□□ -2.1
MSH3P20585 RNU6-1045P-201ENST00000516321 107 ntBASIC1.93□□□□□ -2.1
MSH3P20585 Y_RNA.713-201ENST00000517013 96 ntBASIC1.93□□□□□ -2.1
MSH3P20585 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.93□□□□□ -2.1
MSH3P20585 AC008749.1-201ENST00000597650 306 ntBASIC1.93□□□□□ -2.1
MSH3P20585 AC136443.5-201ENST00000603741 370 ntBASIC1.93□□□□□ -2.1
MSH3P20585 Y_RNA.772-201ENST00000606692 102 ntBASIC1.93□□□□□ -2.1
MSH3P20585 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.93□□□□□ -2.1
MSH3P20585 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.92□□□□□ -2.1
MSH3P20585 Y_RNA.99-201ENST00000363138 105 ntBASIC1.92□□□□□ -2.1
MSH3P20585 RNU6-626P-201ENST00000363354 107 ntBASIC1.92□□□□□ -2.1
MSH3P20585 RNU6-1264P-201ENST00000383891 107 ntBASIC1.92□□□□□ -2.1
MSH3P20585 RNU6-418P-201ENST00000384035 107 ntBASIC1.92□□□□□ -2.1
MSH3P20585 Y_RNA.439-201ENST00000384119 94 ntBASIC1.92□□□□□ -2.1
MSH3P20585 SUMO2P12-201ENST00000405924 140 ntBASIC1.92□□□□□ -2.1
MSH3P20585 RN7SKP284-201ENST00000411002 343 ntBASIC1.92□□□□□ -2.1
MSH3P20585 RAB28P5-201ENST00000427490 651 ntBASIC1.92□□□□□ -2.1
MSH3P20585 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.92□□□□□ -2.1
MSH3P20585 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.92□□□□□ -2.1
MSH3P20585 MTND5P22-201ENST00000458380 195 ntBASIC1.92□□□□□ -2.1
MSH3P20585 AC010531.2-201ENST00000465012 153 ntBASIC1.92□□□□□ -2.1
MSH3P20585 RNU6-948P-201ENST00000516374 107 ntBASIC1.92□□□□□ -2.1
MSH3P20585 RNU6-107P-201ENST00000516643 102 ntBASIC1.92□□□□□ -2.1
MSH3P20585 RNU6-897P-201ENST00000517135 105 ntBASIC1.92□□□□□ -2.1
MSH3P20585 AC131281.1-201ENST00000522984 164 ntBASIC1.92□□□□□ -2.1
MSH3P20585 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.92□□□□□ -2.1
MSH3P20585 AP002001.1-203ENST00000534002 267 ntBASIC1.92□□□□□ -2.1
MSH3P20585 AC055872.1-201ENST00000570978 278 ntBASIC1.92□□□□□ -2.1
MSH3P20585 AC026271.5-201ENST00000577873 130 ntBASIC1.92□□□□□ -2.1
MSH3P20585 MIR4529-201ENST00000578110 78 ntBASIC1.92□□□□□ -2.1
MSH3P20585 AC007229.1-201ENST00000590455 412 ntBASIC1.92□□□□□ -2.1
MSH3P20585 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 195.7 ms