Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 RNU6-1141P-201ENST00000364520 107 ntBASIC-1.3□□□□□ -2.62
HMGA1P17096 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.3□□□□□ -2.62
HMGA1P17096 RNU6-205P-201ENST00000390858 107 ntBASIC-1.3□□□□□ -2.62
HMGA1P17096 RNU6ATAC6P-201ENST00000408132 126 ntBASIC-1.3□□□□□ -2.62
HMGA1P17096 AC093899.1-201ENST00000457984 376 ntBASIC-1.3□□□□□ -2.62
HMGA1P17096 RNU7-136P-201ENST00000458819 69 ntBASIC-1.3□□□□□ -2.62
HMGA1P17096 RNU7-102P-201ENST00000458948 62 ntBASIC-1.3□□□□□ -2.62
HMGA1P17096 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC-1.3□□□□□ -2.62
HMGA1P17096 RNU6-469P-201ENST00000516253 101 ntBASIC-1.3□□□□□ -2.62
HMGA1P17096 RNU6-881P-201ENST00000516813 102 ntBASIC-1.3□□□□□ -2.62
HMGA1P17096 RNU7-128P-201ENST00000517247 62 ntBASIC-1.3□□□□□ -2.62
HMGA1P17096 AC090617.3-201ENST00000573670 475 ntBASIC-1.3□□□□□ -2.62
HMGA1P17096 AC125232.2-201ENST00000592457 143 ntBASIC-1.3□□□□□ -2.62
HMGA1P17096 AC010999.1-201ENST00000611856 324 ntBASIC-1.3□□□□□ -2.62
HMGA1P17096 RMST_10.1-201ENST00000616309 154 ntBASIC-1.3□□□□□ -2.62
HMGA1P17096 SCARNA4-201ENST00000629045 128 ntBASIC-1.3□□□□□ -2.62
HMGA1P17096 MTND5P42-201ENST00000637720 498 ntBASIC-1.3□□□□□ -2.62
HMGA1P17096 Y_RNA.453-201ENST00000384223 109 ntBASIC-1.31□□□□□ -2.62
HMGA1P17096 Y_RNA.498-201ENST00000384460 102 ntBASIC-1.31□□□□□ -2.62
HMGA1P17096 RNU4-22P-201ENST00000411058 166 ntBASIC-1.31□□□□□ -2.62
HMGA1P17096 FCF1P9-201ENST00000412546 282 ntBASIC-1.31□□□□□ -2.62
HMGA1P17096 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC-1.31□□□□□ -2.62
HMGA1P17096 MTND3P17-201ENST00000416968 344 ntBASIC-1.31□□□□□ -2.62
HMGA1P17096 RNA5SP461-201ENST00000516451 104 ntBASIC-1.31□□□□□ -2.62
HMGA1P17096 Y_RNA.700-201ENST00000516806 100 ntBASIC-1.31□□□□□ -2.62
HMGA1P17096 AP001189.2-201ENST00000527320 189 ntBASIC-1.31□□□□□ -2.62
HMGA1P17096 AC115989.2-201ENST00000578640 563 ntBASIC-1.31□□□□□ -2.62
HMGA1P17096 AL158042.1-201ENST00000605338 460 ntBASIC-1.31□□□□□ -2.62
HMGA1P17096 MIR15A-201ENST00000607334 83 ntBASIC-1.31□□□□□ -2.62
HMGA1P17096 AC006441.5-201ENST00000612680 209 ntBASIC-1.31□□□□□ -2.62
HMGA1P17096 AC112487.2-201ENST00000637950 304 ntBASIC-1.31□□□□□ -2.62
HMGA1P17096 RNU6-428P-201ENST00000362942 107 ntBASIC-1.32□□□□□ -2.62
HMGA1P17096 RNA5SP205-201ENST00000364653 136 ntBASIC-1.32□□□□□ -2.62
HMGA1P17096 RNU6-975P-201ENST00000384296 105 ntBASIC-1.32□□□□□ -2.62
HMGA1P17096 RNU6-364P-201ENST00000384387 107 ntBASIC-1.32□□□□□ -2.62
HMGA1P17096 SNORD65C-201ENST00000390962 71 ntBASIC-1.32□□□□□ -2.62
HMGA1P17096 RNU6-1245P-201ENST00000411130 106 ntBASIC-1.32□□□□□ -2.62
HMGA1P17096 AC244670.1-201ENST00000436879 112 ntBASIC-1.32□□□□□ -2.62
HMGA1P17096 ZNF736P1Y-201ENST00000440402 1276 ntBASIC-1.32□□□□□ -2.62
HMGA1P17096 MTATP6P26-201ENST00000445926 662 ntBASIC-1.32□□□□□ -2.62
HMGA1P17096 AC074290.1-201ENST00000448883 135 ntBASIC-1.32□□□□□ -2.62
HMGA1P17096 RNU7-59P-201ENST00000459101 61 ntBASIC-1.32□□□□□ -2.62
HMGA1P17096 RNU7-28P-201ENST00000516759 62 ntBASIC-1.32□□□□□ -2.62
HMGA1P17096 RNU6-1261P-201ENST00000517194 104 ntBASIC-1.32□□□□□ -2.62
HMGA1P17096 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC-1.32□□□□□ -2.62
HMGA1P17096 MIR3925-201ENST00000584674 77 ntBASIC-1.32□□□□□ -2.62
HMGA1P17096 AC097478.2-201ENST00000610572 514 ntBASIC-1.32□□□□□ -2.62
HMGA1P17096 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC-1.32□□□□□ -2.62
HMGA1P17096 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC-1.32□□□□□ -2.62
HMGA1P17096 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC-1.33□□□□□ -2.62
HMGA1P17096 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.33□□□□□ -2.62
HMGA1P17096 SNORD14.1-201ENST00000365609 90 ntBASIC-1.33□□□□□ -2.62
HMGA1P17096 Y_RNA.452-201ENST00000384202 108 ntBASIC-1.33□□□□□ -2.62
HMGA1P17096 MIR516B2-201ENST00000385190 85 ntBASIC-1.33□□□□□ -2.62
HMGA1P17096 SNORA75.1-201ENST00000391130 148 ntBASIC-1.33□□□□□ -2.62
HMGA1P17096 AL512326.2-201ENST00000426359 151 ntBASIC-1.33□□□□□ -2.62
HMGA1P17096 AL365184.2-201ENST00000431139 435 ntBASIC-1.33□□□□□ -2.62
HMGA1P17096 MTND1P4-201ENST00000435196 415 ntBASIC-1.33□□□□□ -2.62
HMGA1P17096 POLR2KP2-201ENST00000438155 177 ntBASIC-1.33□□□□□ -2.62
HMGA1P17096 MTND1P31-201ENST00000449206 961 ntBASIC-1.33□□□□□ -2.62
HMGA1P17096 RNU7-140P-201ENST00000459546 60 ntBASIC-1.33□□□□□ -2.62
HMGA1P17096 AC119751.4-201ENST00000507498 357 ntBASIC-1.33□□□□□ -2.62
HMGA1P17096 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC-1.33□□□□□ -2.62
HMGA1P17096 AC026585.1-201ENST00000619582 524 ntBASIC-1.33□□□□□ -2.62
HMGA1P17096 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.33□□□□□ -2.62
HMGA1P17096 Y_RNA.35-201ENST00000362601 101 ntBASIC-1.34□□□□□ -2.62
HMGA1P17096 RNU4-21P-201ENST00000362802 126 ntBASIC-1.34□□□□□ -2.62
HMGA1P17096 SNORD115-2-201ENST00000362842 82 ntBASIC-1.34□□□□□ -2.62
HMGA1P17096 SNORD114-25-201ENST00000363742 72 ntBASIC-1.34□□□□□ -2.62
HMGA1P17096 SNORA27.3-201ENST00000364937 134 ntBASIC-1.34□□□□□ -2.62
HMGA1P17096 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC-1.34□□□□□ -2.62
HMGA1P17096 AC104563.1-201ENST00000476147 376 ntBASIC-1.34□□□□□ -2.62
HMGA1P17096 AC104383.1-201ENST00000530297 370 ntBASIC-1.34□□□□□ -2.62
HMGA1P17096 AC008521.1-201ENST00000587471 187 ntBASIC-1.34□□□□□ -2.62
HMGA1P17096 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC-1.34□□□□□ -2.62
HMGA1P17096 AP000811.1-201ENST00000603803 651 ntBASIC-1.34□□□□□ -2.62
HMGA1P17096 RNU1-29P-201ENST00000606574 126 ntBASIC-1.34□□□□□ -2.62
HMGA1P17096 AP000676.3-201ENST00000623299 569 ntBASIC-1.34□□□□□ -2.62
HMGA1P17096 RNU6-216P-201ENST00000363282 104 ntBASIC-1.35□□□□□ -2.63
HMGA1P17096 SNORD45.3-201ENST00000363836 72 ntBASIC-1.35□□□□□ -2.63
HMGA1P17096 MIR208B-201ENST00000401172 77 ntBASIC-1.35□□□□□ -2.63
HMGA1P17096 AC079781.2-201ENST00000446424 169 ntBASIC-1.35□□□□□ -2.63
HMGA1P17096 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC-1.35□□□□□ -2.63
HMGA1P17096 AC010525.2-201ENST00000590920 195 ntBASIC-1.35□□□□□ -2.63
HMGA1P17096 AC099786.3-201ENST00000565735 1410 ntBASIC-1.35□□□□□ -2.63
HMGA1P17096 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC-1.35□□□□□ -2.63
HMGA1P17096 RNU6-562P-201ENST00000362731 107 ntBASIC-1.36□□□□□ -2.63
HMGA1P17096 RNU6-673P-201ENST00000365084 104 ntBASIC-1.36□□□□□ -2.63
HMGA1P17096 Y_RNA.410-201ENST00000383992 113 ntBASIC-1.36□□□□□ -2.63
HMGA1P17096 Y_RNA.488-201ENST00000384403 102 ntBASIC-1.36□□□□□ -2.63
HMGA1P17096 MIR19A-201ENST00000384878 82 ntBASIC-1.36□□□□□ -2.63
HMGA1P17096 MIR891A-201ENST00000401237 79 ntBASIC-1.36□□□□□ -2.63
HMGA1P17096 AC090960.1-201ENST00000421072 306 ntBASIC-1.36□□□□□ -2.63
HMGA1P17096 AC010975.2-201ENST00000427781 588 ntBASIC-1.36□□□□□ -2.63
HMGA1P17096 AC013470.1-201ENST00000453438 462 ntBASIC-1.36□□□□□ -2.63
HMGA1P17096 Y_RNA.654-201ENST00000497848 106 ntBASIC-1.36□□□□□ -2.63
HMGA1P17096 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC-1.36□□□□□ -2.63
HMGA1P17096 RNU2-56P-201ENST00000516826 190 ntBASIC-1.36□□□□□ -2.63
HMGA1P17096 RNU6-677P-201ENST00000516914 101 ntBASIC-1.36□□□□□ -2.63
HMGA1P17096 SNORA74.3-201ENST00000517108 154 ntBASIC-1.36□□□□□ -2.63
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms