Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 SNORD11.1-201ENST00000459482 85 ntBASIC0.19□□□□□ -2.38
TPM1P09493 SNORD42A-201ENST00000459584 64 ntBASIC0.19□□□□□ -2.38
TPM1P09493 AC091021.1-201ENST00000468051 388 ntBASIC0.19□□□□□ -2.38
TPM1P09493 RNU6-1198P-201ENST00000516904 67 ntBASIC0.19□□□□□ -2.38
TPM1P09493 AC036111.3-201ENST00000526389 112 ntBASIC0.19□□□□□ -2.38
TPM1P09493 MIR4452-201ENST00000583004 71 ntBASIC0.19□□□□□ -2.38
TPM1P09493 AC091178.2-201ENST00000584401 117 ntBASIC0.19□□□□□ -2.38
TPM1P09493 AC008536.2-201ENST00000607284 349 ntBASIC0.19□□□□□ -2.38
TPM1P09493 AC017083.3-201ENST00000609955 700 ntBASIC0.19□□□□□ -2.38
TPM1P09493 RNU6-1120P-201ENST00000362988 108 ntBASIC0.18□□□□□ -2.38
TPM1P09493 Y_RNA.415-201ENST00000384012 112 ntBASIC0.18□□□□□ -2.38
TPM1P09493 RNU6-297P-201ENST00000384636 107 ntBASIC0.18□□□□□ -2.38
TPM1P09493 HMGN2P26-201ENST00000463169 339 ntBASIC0.18□□□□□ -2.38
TPM1P09493 AC010598.1-201ENST00000510378 103 ntBASIC0.18□□□□□ -2.38
TPM1P09493 AF235103.2-201ENST00000525753 346 ntBASIC0.18□□□□□ -2.38
TPM1P09493 RNU6-349P-201ENST00000362402 107 ntBASIC0.17□□□□□ -2.38
TPM1P09493 SNORA25.3-201ENST00000363205 127 ntBASIC0.17□□□□□ -2.38
TPM1P09493 RNU6-1297P-201ENST00000384415 104 ntBASIC0.17□□□□□ -2.38
TPM1P09493 MIR521-1-201ENST00000384902 87 ntBASIC0.17□□□□□ -2.38
TPM1P09493 MIR1827-201ENST00000408549 66 ntBASIC0.17□□□□□ -2.38
TPM1P09493 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.17□□□□□ -2.38
TPM1P09493 RNU6-325P-201ENST00000411132 105 ntBASIC0.17□□□□□ -2.38
TPM1P09493 MTCYBP8-201ENST00000422855 651 ntBASIC0.17□□□□□ -2.38
TPM1P09493 MTND4P18-201ENST00000447010 465 ntBASIC0.17□□□□□ -2.38
TPM1P09493 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC0.17□□□□□ -2.38
TPM1P09493 AC104383.1-201ENST00000530297 370 ntBASIC0.17□□□□□ -2.38
TPM1P09493 CPDP1-201ENST00000579660 283 ntBASIC0.17□□□□□ -2.38
TPM1P09493 AC090616.2-202ENST00000584248 222 ntBASIC0.17□□□□□ -2.38
TPM1P09493 MIR4298-201ENST00000584380 73 ntBASIC0.17□□□□□ -2.38
TPM1P09493 MTND4P12-201ENST00000498999 1377 ntBASIC0.17□□□□□ -2.38
TPM1P09493 Y_RNA.560-201ENST00000384689 102 ntBASIC0.16□□□□□ -2.38
TPM1P09493 RNU6-189P-201ENST00000516120 101 ntBASIC0.16□□□□□ -2.38
TPM1P09493 AC022306.3-201ENST00000619930 550 ntBASIC0.16□□□□□ -2.38
TPM1P09493 AL008636.1-201ENST00000625038 1018 ntBASIC0.16□□□□□ -2.38
TPM1P09493 SRP54-214ENST00000630962 162 ntTSL 5 BASIC0.16□□□□□ -2.38
TPM1P09493 AC068137.4-201ENST00000638485 296 ntBASIC0.16□□□□□ -2.38
TPM1P09493 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.15□□□□□ -2.39
TPM1P09493 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.15□□□□□ -2.39
TPM1P09493 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.15□□□□□ -2.39
TPM1P09493 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC0.15□□□□□ -2.39
TPM1P09493 RN7SKP164-201ENST00000516138 266 ntBASIC0.15□□□□□ -2.39
TPM1P09493 RNU6-1116P-201ENST00000517269 99 ntBASIC0.15□□□□□ -2.39
TPM1P09493 AL157687.1-201ENST00000554853 619 ntBASIC0.15□□□□□ -2.39
TPM1P09493 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC0.15□□□□□ -2.39
TPM1P09493 MIR4711-201ENST00000578274 70 ntBASIC0.15□□□□□ -2.39
TPM1P09493 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC0.15□□□□□ -2.39
TPM1P09493 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.15□□□□□ -2.39
TPM1P09493 RNU6-727P-201ENST00000363592 107 ntBASIC0.14□□□□□ -2.39
TPM1P09493 RNU6-925P-201ENST00000384629 104 ntBASIC0.14□□□□□ -2.39
TPM1P09493 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.14□□□□□ -2.39
TPM1P09493 RNU6-248P-201ENST00000410720 107 ntBASIC0.14□□□□□ -2.39
TPM1P09493 MTATP6P18-201ENST00000417994 673 ntBASIC0.14□□□□□ -2.39
TPM1P09493 CYCSP46-201ENST00000423569 204 ntBASIC0.14□□□□□ -2.39
TPM1P09493 MTCO2P18-201ENST00000457151 658 ntBASIC0.14□□□□□ -2.39
TPM1P09493 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.14□□□□□ -2.39
TPM1P09493 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.14□□□□□ -2.39
TPM1P09493 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.13□□□□□ -2.39
TPM1P09493 RNU6-873P-201ENST00000363833 107 ntBASIC0.13□□□□□ -2.39
TPM1P09493 ZNF885P-201ENST00000420174 1098 ntBASIC0.13□□□□□ -2.39
TPM1P09493 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.13□□□□□ -2.39
TPM1P09493 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.13□□□□□ -2.39
TPM1P09493 Z98949.2-201ENST00000440996 144 ntBASIC0.13□□□□□ -2.39
TPM1P09493 RNU7-63P-201ENST00000459054 62 ntBASIC0.13□□□□□ -2.39
TPM1P09493 MTCO3P38-201ENST00000468910 766 ntBASIC0.13□□□□□ -2.39
TPM1P09493 CYCTP-201ENST00000504253 315 ntBASIC0.13□□□□□ -2.39
TPM1P09493 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC0.13□□□□□ -2.39
TPM1P09493 MIR4424-201ENST00000585257 86 ntBASIC0.13□□□□□ -2.39
TPM1P09493 AC103705.1-201ENST00000619013 241 ntBASIC0.13□□□□□ -2.39
TPM1P09493 AC027279.3-201ENST00000625055 122 ntBASIC0.13□□□□□ -2.39
TPM1P09493 AC073544.1-201ENST00000600110 1595 ntBASIC0.13□□□□□ -2.39
TPM1P09493 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.13□□□□□ -2.39
TPM1P09493 Y_RNA.184-201ENST00000363884 108 ntBASIC0.12□□□□□ -2.39
TPM1P09493 SNORD115-32-201ENST00000364079 82 ntBASIC0.12□□□□□ -2.39
TPM1P09493 RNU1-133P-201ENST00000364867 167 ntBASIC0.12□□□□□ -2.39
TPM1P09493 Y_RNA.319-201ENST00000365138 92 ntBASIC0.12□□□□□ -2.39
TPM1P09493 RNU6-996P-201ENST00000365438 107 ntBASIC0.12□□□□□ -2.39
TPM1P09493 MIR32-201ENST00000384965 70 ntBASIC0.12□□□□□ -2.39
TPM1P09493 AL606923.1-201ENST00000406616 190 ntBASIC0.12□□□□□ -2.39
TPM1P09493 RNA5SP247-201ENST00000411181 105 ntBASIC0.12□□□□□ -2.39
TPM1P09493 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC0.12□□□□□ -2.39
TPM1P09493 AL359672.1-201ENST00000442302 409 ntBASIC0.12□□□□□ -2.39
TPM1P09493 AC073415.1-201ENST00000449240 153 ntBASIC0.12□□□□□ -2.39
TPM1P09493 AC091179.3-201ENST00000474761 144 ntBASIC0.12□□□□□ -2.39
TPM1P09493 MTCO1P29-201ENST00000496868 288 ntBASIC0.12□□□□□ -2.39
TPM1P09493 AC107401.1-201ENST00000503426 685 ntBASIC0.12□□□□□ -2.39
TPM1P09493 RNU7-41P-201ENST00000515917 61 ntBASIC0.12□□□□□ -2.39
TPM1P09493 RNU4ATAC8P-201ENST00000516196 109 ntBASIC0.12□□□□□ -2.39
TPM1P09493 RNU11-2P-201ENST00000516898 142 ntBASIC0.12□□□□□ -2.39
TPM1P09493 AC008133.2-201ENST00000624540 351 ntBASIC0.12□□□□□ -2.39
TPM1P09493 RNU6-82P-201ENST00000363970 107 ntBASIC0.11□□□□□ -2.39
TPM1P09493 SNORD113.3-201ENST00000364630 78 ntBASIC0.11□□□□□ -2.39
TPM1P09493 RNU6-933P-201ENST00000384424 107 ntBASIC0.11□□□□□ -2.39
TPM1P09493 MIR520C-201ENST00000385005 87 ntBASIC0.11□□□□□ -2.39
TPM1P09493 MIR452-201ENST00000385020 85 ntBASIC0.11□□□□□ -2.39
TPM1P09493 MIR1295A-201ENST00000408463 79 ntBASIC0.11□□□□□ -2.39
TPM1P09493 MTCO2P11-201ENST00000431069 680 ntBASIC0.11□□□□□ -2.39
TPM1P09493 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC0.11□□□□□ -2.39
TPM1P09493 RNU6-1291P-201ENST00000516591 104 ntBASIC0.11□□□□□ -2.39
TPM1P09493 MIR4300-201ENST00000581016 96 ntBASIC0.11□□□□□ -2.39
TPM1P09493 AC120024.3-201ENST00000603167 156 ntBASIC0.11□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 120.8 ms