Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
RTN3O95197 RNA5SP361-201ENST00000362686 118 ntBASIC1.98□□□□□ -2.09
RTN3O95197 SNORD116-29-201ENST00000384516 83 ntBASIC1.98□□□□□ -2.09
RTN3O95197 RNU6-296P-201ENST00000384608 107 ntBASIC1.98□□□□□ -2.09
RTN3O95197 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
RTN3O95197 SNORA69.1-201ENST00000390904 137 ntBASIC1.98□□□□□ -2.09
RTN3O95197 SNORA40.18-201ENST00000391200 128 ntBASIC1.98□□□□□ -2.09
RTN3O95197 RNU6-1156P-201ENST00000410365 100 ntBASIC1.98□□□□□ -2.09
RTN3O95197 AC114482.1-201ENST00000418010 247 ntBASIC1.98□□□□□ -2.09
RTN3O95197 AC007677.1-201ENST00000445757 515 ntBASIC1.98□□□□□ -2.09
RTN3O95197 AC107393.1-201ENST00000512403 346 ntBASIC1.98□□□□□ -2.09
RTN3O95197 RN7SKP49-201ENST00000516675 260 ntBASIC1.98□□□□□ -2.09
RTN3O95197 Y_RNA.718-201ENST00000517110 102 ntBASIC1.98□□□□□ -2.09
RTN3O95197 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
RTN3O95197 SNRPGP19-201ENST00000603826 189 ntBASIC1.98□□□□□ -2.09
RTN3O95197 AC103810.8-201ENST00000607347 118 ntBASIC1.98□□□□□ -2.09
RTN3O95197 MIR6845-201ENST00000613182 61 ntBASIC1.98□□□□□ -2.09
RTN3O95197 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.98□□□□□ -2.09
RTN3O95197 Y_RNA.356-201ENST00000365475 113 ntBASIC1.97□□□□□ -2.09
RTN3O95197 Y_RNA.529-201ENST00000384586 119 ntBASIC1.97□□□□□ -2.09
RTN3O95197 RNU6-417P-201ENST00000384712 107 ntBASIC1.97□□□□□ -2.09
RTN3O95197 RPL23AP36-201ENST00000413895 458 ntBASIC1.97□□□□□ -2.09
RTN3O95197 MTCO2P27-201ENST00000420740 428 ntBASIC1.97□□□□□ -2.09
RTN3O95197 AC074133.1-201ENST00000515696 183 ntBASIC1.97□□□□□ -2.09
RTN3O95197 AC084364.2-201ENST00000546924 395 ntBASIC1.97□□□□□ -2.09
RTN3O95197 AP000942.3-201ENST00000603702 160 ntBASIC1.97□□□□□ -2.09
RTN3O95197 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.97□□□□□ -2.09
RTN3O95197 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.97□□□□□ -2.09
RTN3O95197 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.97□□□□□ -2.09
RTN3O95197 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.97□□□□□ -2.09
RTN3O95197 AC073544.1-201ENST00000600110 1595 ntBASIC1.97□□□□□ -2.09
RTN3O95197 RNU6-661P-201ENST00000362409 107 ntBASIC1.96□□□□□ -2.1
RTN3O95197 Y_RNA.287-201ENST00000364853 94 ntBASIC1.96□□□□□ -2.1
RTN3O95197 RNU2-20P-201ENST00000410425 191 ntBASIC1.96□□□□□ -2.1
RTN3O95197 RNU2-7P-201ENST00000410794 178 ntBASIC1.96□□□□□ -2.1
RTN3O95197 Y_RNA.632-201ENST00000459189 102 ntBASIC1.96□□□□□ -2.1
RTN3O95197 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.96□□□□□ -2.1
RTN3O95197 AC144568.1-201ENST00000520139 137 ntBASIC1.96□□□□□ -2.1
RTN3O95197 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.96□□□□□ -2.1
RTN3O95197 AC022432.1-201ENST00000595739 310 ntBASIC1.96□□□□□ -2.1
RTN3O95197 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.96□□□□□ -2.1
RTN3O95197 RNU6-490P-201ENST00000362985 107 ntBASIC1.95□□□□□ -2.1
RTN3O95197 SNORA63D-201ENST00000364359 132 ntBASIC1.95□□□□□ -2.1
RTN3O95197 RNU6-1264P-201ENST00000383891 107 ntBASIC1.95□□□□□ -2.1
RTN3O95197 RNU6-318P-201ENST00000384283 103 ntBASIC1.95□□□□□ -2.1
RTN3O95197 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.95□□□□□ -2.1
RTN3O95197 PCNPP5-201ENST00000452246 481 ntBASIC1.95□□□□□ -2.1
RTN3O95197 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.95□□□□□ -2.1
RTN3O95197 AC108729.3-201ENST00000513484 108 ntBASIC1.95□□□□□ -2.1
RTN3O95197 SNORA44.1-201ENST00000517031 108 ntBASIC1.95□□□□□ -2.1
RTN3O95197 AC024995.1-201ENST00000523014 93 ntBASIC1.95□□□□□ -2.1
RTN3O95197 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.95□□□□□ -2.1
RTN3O95197 AC084781.2-201ENST00000615568 161 ntBASIC1.95□□□□□ -2.1
RTN3O95197 MTND5P10-201ENST00000603719 1809 ntBASIC1.94□□□□□ -2.1
RTN3O95197 RNU6-1301P-201ENST00000362724 104 ntBASIC1.94□□□□□ -2.1
RTN3O95197 RNU6-1040P-201ENST00000383974 107 ntBASIC1.94□□□□□ -2.1
RTN3O95197 Y_RNA.592-201ENST00000410274 109 ntBASIC1.94□□□□□ -2.1
RTN3O95197 MTND4P28-201ENST00000426217 387 ntBASIC1.94□□□□□ -2.1
RTN3O95197 AC099799.1-201ENST00000439809 192 ntBASIC1.94□□□□□ -2.1
RTN3O95197 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.94□□□□□ -2.1
RTN3O95197 RPL23AP63-201ENST00000498752 471 ntBASIC1.94□□□□□ -2.1
RTN3O95197 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.94□□□□□ -2.1
RTN3O95197 HMGN1P13-201ENST00000505795 138 ntBASIC1.94□□□□□ -2.1
RTN3O95197 AC105758.1-201ENST00000506038 399 ntBASIC1.94□□□□□ -2.1
RTN3O95197 RNA5SP481-201ENST00000516814 122 ntBASIC1.94□□□□□ -2.1
RTN3O95197 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.94□□□□□ -2.1
RTN3O95197 AL357075.2-201ENST00000614906 189 ntBASIC1.94□□□□□ -2.1
RTN3O95197 AC087588.2-201ENST00000617667 426 ntBASIC1.94□□□□□ -2.1
RTN3O95197 SNORA33-201ENST00000363664 130 ntBASIC1.93□□□□□ -2.1
RTN3O95197 MT-TD-201ENST00000387419 68 ntBASIC1.93□□□□□ -2.1
RTN3O95197 RNA5SP323-201ENST00000391094 133 ntBASIC1.93□□□□□ -2.1
RTN3O95197 MIR1287-201ENST00000408492 90 ntBASIC1.93□□□□□ -2.1
RTN3O95197 ELOCP21-201ENST00000412558 336 ntBASIC1.93□□□□□ -2.1
RTN3O95197 RPS20P15-201ENST00000412792 311 ntBASIC1.93□□□□□ -2.1
RTN3O95197 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.93□□□□□ -2.1
RTN3O95197 MTND4LP11-201ENST00000422184 280 ntBASIC1.93□□□□□ -2.1
RTN3O95197 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.93□□□□□ -2.1
RTN3O95197 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.93□□□□□ -2.1
RTN3O95197 AC236972.2-201ENST00000434979 310 ntBASIC1.93□□□□□ -2.1
RTN3O95197 MTATP6P23-201ENST00000440153 476 ntBASIC1.93□□□□□ -2.1
RTN3O95197 RNU7-152P-201ENST00000458982 64 ntBASIC1.93□□□□□ -2.1
RTN3O95197 SNORD19B-201ENST00000459623 84 ntBASIC1.93□□□□□ -2.1
RTN3O95197 RPL36AP21-201ENST00000490372 323 ntBASIC1.93□□□□□ -2.1
RTN3O95197 RNA5SP437-201ENST00000517249 129 ntBASIC1.93□□□□□ -2.1
RTN3O95197 AC018448.1-201ENST00000552843 316 ntBASIC1.93□□□□□ -2.1
RTN3O95197 AL137100.2-201ENST00000555786 315 ntBASIC1.93□□□□□ -2.1
RTN3O95197 AL359075.3-201ENST00000613288 217 ntBASIC1.93□□□□□ -2.1
RTN3O95197 Y_RNA.804-201ENST00000615262 101 ntBASIC1.93□□□□□ -2.1
RTN3O95197 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.93□□□□□ -2.1
RTN3O95197 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
RTN3O95197 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.93□□□□□ -2.1
RTN3O95197 Y_RNA.67-201ENST00000362870 100 ntBASIC1.92□□□□□ -2.1
RTN3O95197 Y_RNA.498-201ENST00000384460 102 ntBASIC1.92□□□□□ -2.1
RTN3O95197 MIR559-201ENST00000385188 96 ntBASIC1.92□□□□□ -2.1
RTN3O95197 RNA5SP467-201ENST00000391274 118 ntBASIC1.92□□□□□ -2.1
RTN3O95197 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.92□□□□□ -2.1
RTN3O95197 HSPE1P9-201ENST00000440046 311 ntBASIC1.92□□□□□ -2.1
RTN3O95197 AC003989.2-201ENST00000440224 169 ntBASIC1.92□□□□□ -2.1
RTN3O95197 AC025465.3-201ENST00000510570 311 ntBASIC1.92□□□□□ -2.1
RTN3O95197 MTND3P22-201ENST00000510932 243 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 205.7 ms