Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
NPHP1O15259 Y_RNA.224-201ENST00000364308 111 ntBASIC2.05□□□□□ -2.08
NPHP1O15259 RNU6-331P-201ENST00000384724 107 ntBASIC2.05□□□□□ -2.08
NPHP1O15259 RNA5SP467-201ENST00000391274 118 ntBASIC2.05□□□□□ -2.08
NPHP1O15259 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC2.05□□□□□ -2.08
NPHP1O15259 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.05□□□□□ -2.08
NPHP1O15259 EIF1P2-201ENST00000428233 350 ntBASIC2.05□□□□□ -2.08
NPHP1O15259 MTND4P18-201ENST00000447010 465 ntBASIC2.05□□□□□ -2.08
NPHP1O15259 RPL31P58-201ENST00000469001 379 ntBASIC2.05□□□□□ -2.08
NPHP1O15259 MTND4P17-201ENST00000470444 350 ntBASIC2.05□□□□□ -2.08
NPHP1O15259 AC024995.1-201ENST00000523014 93 ntBASIC2.05□□□□□ -2.08
NPHP1O15259 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC2.05□□□□□ -2.08
NPHP1O15259 AC015720.1-201ENST00000565251 277 ntBASIC2.05□□□□□ -2.08
NPHP1O15259 SNORA77B-201ENST00000578179 125 ntBASIC2.05□□□□□ -2.08
NPHP1O15259 PISRT1.1-201ENST00000616930 107 ntBASIC2.05□□□□□ -2.08
NPHP1O15259 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC2.05□□□□□ -2.08
NPHP1O15259 Y_RNA.122-201ENST00000363331 96 ntBASIC2.04□□□□□ -2.08
NPHP1O15259 SNORD81.2-201ENST00000365153 76 ntBASIC2.04□□□□□ -2.08
NPHP1O15259 Y_RNA.364-201ENST00000365532 101 ntBASIC2.04□□□□□ -2.08
NPHP1O15259 SNORA75.4-201ENST00000391278 119 ntBASIC2.04□□□□□ -2.08
NPHP1O15259 MIR1267-201ENST00000408723 78 ntBASIC2.04□□□□□ -2.08
NPHP1O15259 RNU4-14P-201ENST00000410858 122 ntBASIC2.04□□□□□ -2.08
NPHP1O15259 RNU6-1001P-201ENST00000411265 100 ntBASIC2.04□□□□□ -2.08
NPHP1O15259 JTBP1-201ENST00000441314 247 ntBASIC2.04□□□□□ -2.08
NPHP1O15259 AC073910.1-201ENST00000445047 438 ntBASIC2.04□□□□□ -2.08
NPHP1O15259 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC2.04□□□□□ -2.08
NPHP1O15259 AC027575.1-201ENST00000481064 460 ntBASIC2.04□□□□□ -2.08
NPHP1O15259 SCARNA16.2-201ENST00000516520 172 ntBASIC2.04□□□□□ -2.08
NPHP1O15259 AC091144.1-201ENST00000519573 138 ntBASIC2.04□□□□□ -2.08
NPHP1O15259 HSBP1P1-201ENST00000555205 166 ntBASIC2.04□□□□□ -2.08
NPHP1O15259 AC090617.3-201ENST00000573670 475 ntBASIC2.04□□□□□ -2.08
NPHP1O15259 MIR4285-201ENST00000581001 85 ntBASIC2.04□□□□□ -2.08
NPHP1O15259 AC005899.2-201ENST00000584353 90 ntBASIC2.04□□□□□ -2.08
NPHP1O15259 TPTEP1-208ENST00000636884 213 ntBASIC2.04□□□□□ -2.08
NPHP1O15259 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
NPHP1O15259 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.03□□□□□ -2.08
NPHP1O15259 RNU6-60P-201ENST00000364792 103 ntBASIC2.03□□□□□ -2.08
NPHP1O15259 Y_RNA.355-201ENST00000365462 98 ntBASIC2.03□□□□□ -2.08
NPHP1O15259 FTH1P12-201ENST00000432137 551 ntBASIC2.03□□□□□ -2.08
NPHP1O15259 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC2.03□□□□□ -2.08
NPHP1O15259 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC2.03□□□□□ -2.08
NPHP1O15259 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.03□□□□□ -2.08
NPHP1O15259 FRG2DP-202ENST00000566967 323 ntBASIC2.03□□□□□ -2.08
NPHP1O15259 WT1-AS_8.1-201ENST00000615200 275 ntBASIC2.03□□□□□ -2.08
NPHP1O15259 U6.108-201ENST00000637764 58 ntBASIC2.03□□□□□ -2.08
NPHP1O15259 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.09
NPHP1O15259 RNA5SP363-201ENST00000365072 115 ntBASIC2.02□□□□□ -2.09
NPHP1O15259 RNU6-1283P-201ENST00000365314 105 ntBASIC2.02□□□□□ -2.09
NPHP1O15259 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC2.02□□□□□ -2.09
NPHP1O15259 snoU13.9-201ENST00000458927 103 ntBASIC2.02□□□□□ -2.09
NPHP1O15259 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.02□□□□□ -2.09
NPHP1O15259 AL157834.3-201ENST00000615543 103 ntBASIC2.02□□□□□ -2.09
NPHP1O15259 AL669831.3-213ENST00000636676 183 ntBASIC2.02□□□□□ -2.09
NPHP1O15259 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
NPHP1O15259 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.01□□□□□ -2.09
NPHP1O15259 MIR126-201ENST00000362291 85 ntBASIC2.01□□□□□ -2.09
NPHP1O15259 SNORA7.1-201ENST00000363750 139 ntBASIC2.01□□□□□ -2.09
NPHP1O15259 MIR329-1-201ENST00000385028 80 ntBASIC2.01□□□□□ -2.09
NPHP1O15259 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
NPHP1O15259 RNA5SP323-201ENST00000391094 133 ntBASIC2.01□□□□□ -2.09
NPHP1O15259 RN7SKP101-201ENST00000411376 320 ntBASIC2.01□□□□□ -2.09
NPHP1O15259 AC245517.4-201ENST00000448601 281 ntBASIC2.01□□□□□ -2.09
NPHP1O15259 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.01□□□□□ -2.09
NPHP1O15259 Y_RNA.635-201ENST00000459041 101 ntBASIC2.01□□□□□ -2.09
NPHP1O15259 snoU13.27-201ENST00000459278 104 ntBASIC2.01□□□□□ -2.09
NPHP1O15259 RNU7-87P-201ENST00000459343 62 ntBASIC2.01□□□□□ -2.09
NPHP1O15259 RNU6-307P-201ENST00000516743 106 ntBASIC2.01□□□□□ -2.09
NPHP1O15259 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC2.01□□□□□ -2.09
NPHP1O15259 AC004584.2-201ENST00000570407 410 ntBASIC2.01□□□□□ -2.09
NPHP1O15259 MIR3122-201ENST00000577243 73 ntBASIC2.01□□□□□ -2.09
NPHP1O15259 AC022432.1-201ENST00000595739 310 ntBASIC2.01□□□□□ -2.09
NPHP1O15259 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2.01□□□□□ -2.09
NPHP1O15259 AC092794.2-201ENST00000620933 563 ntBASIC2.01□□□□□ -2.09
NPHP1O15259 AC095038.3-201ENST00000634439 195 ntBASIC2.01□□□□□ -2.09
NPHP1O15259 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
NPHP1O15259 AC100821.1-201ENST00000523153 2479 ntBASIC2□□□□□ -2.09
NPHP1O15259 SNORA4.2-201ENST00000365313 147 ntBASIC2□□□□□ -2.09
NPHP1O15259 Y_RNA.557-201ENST00000384680 107 ntBASIC2□□□□□ -2.09
NPHP1O15259 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2□□□□□ -2.09
NPHP1O15259 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC2□□□□□ -2.09
NPHP1O15259 AL163195.1-201ENST00000496941 348 ntBASIC2□□□□□ -2.09
NPHP1O15259 PRDX4P1-201ENST00000507189 574 ntBASIC2□□□□□ -2.09
NPHP1O15259 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2□□□□□ -2.09
NPHP1O15259 RNU6-1213P-201ENST00000517075 94 ntBASIC2□□□□□ -2.09
NPHP1O15259 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2□□□□□ -2.09
NPHP1O15259 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2□□□□□ -2.09
NPHP1O15259 AL359075.3-201ENST00000613288 217 ntBASIC2□□□□□ -2.09
NPHP1O15259 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2□□□□□ -2.09
NPHP1O15259 AC099654.14-201ENST00000638599 341 ntBASIC2□□□□□ -2.09
NPHP1O15259 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
NPHP1O15259 RNU6-1266P-201ENST00000362794 105 ntBASIC1.99□□□□□ -2.09
NPHP1O15259 RNU4-42P-201ENST00000364738 142 ntBASIC1.99□□□□□ -2.09
NPHP1O15259 Y_RNA.390-201ENST00000383932 102 ntBASIC1.99□□□□□ -2.09
NPHP1O15259 MIR518E-201ENST00000385252 88 ntBASIC1.99□□□□□ -2.09
NPHP1O15259 AC138393.2-201ENST00000414742 246 ntBASIC1.99□□□□□ -2.09
NPHP1O15259 TOMM22P2-201ENST00000430735 237 ntBASIC1.99□□□□□ -2.09
NPHP1O15259 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.99□□□□□ -2.09
NPHP1O15259 U8.22-201ENST00000459141 133 ntBASIC1.99□□□□□ -2.09
NPHP1O15259 RPL17P19-201ENST00000489069 552 ntBASIC1.99□□□□□ -2.09
NPHP1O15259 SNORA20.3-201ENST00000516880 132 ntBASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms