Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 MIR1261-201ENST00000408659 82 ntBASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 RNA5SP425-201ENST00000410336 112 ntBASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 RNA5SP475-201ENST00000410568 110 ntBASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 AC007064.1-201ENST00000412238 351 ntBASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 RPL21P38-201ENST00000418090 167 ntBASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 TOMM22P2-201ENST00000430735 237 ntBASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 RPS15AP28-201ENST00000435088 386 ntBASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 AC114982.1-201ENST00000469402 321 ntBASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 SEPT14P8-201ENST00000508026 178 ntBASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 MIR4753-201ENST00000585119 83 ntBASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 AC022441.3-201ENST00000605737 136 ntBASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 SNORD113-5-201ENST00000607261 78 ntBASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 SNORD113-8-201ENST00000363497 74 ntBASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-702P-201ENST00000364982 107 ntBASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-1175P-201ENST00000365200 107 ntBASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 AC096920.1-201ENST00000423991 241 ntBASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 AC093259.1-201ENST00000509755 300 ntBASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-496P-201ENST00000516145 99 ntBASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 Y_RNA.668-201ENST00000516233 93 ntBASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-107P-201ENST00000516643 102 ntBASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 RNA5SP490-201ENST00000517141 136 ntBASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 AP002001.1-203ENST00000534002 267 ntBASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 NDUFA5P6-201ENST00000542110 379 ntBASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 AC055872.1-201ENST00000570978 278 ntBASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 AC011373.1-201ENST00000607270 237 ntBASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 AC004467.1-201ENST00000615678 330 ntBASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 AC009487.4-201ENST00000624969 3585 ntBASIC2.65□□□□□ -1.99
PCDHA1Q9Y5I3 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 MTND5P6-201ENST00000422338 1798 ntBASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 Y_RNA.84-201ENST00000363011 104 ntBASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 SNORD81.1-201ENST00000363064 77 ntBASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 Y_RNA.332-201ENST00000365271 113 ntBASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-438P-201ENST00000365561 103 ntBASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 Y_RNA.396-201ENST00000383949 103 ntBASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 Y_RNA.461-201ENST00000384263 103 ntBASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-975P-201ENST00000384296 105 ntBASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 MT-TW-201ENST00000387382 68 ntBASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-1203P-201ENST00000410703 110 ntBASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 RPL23AP36-201ENST00000413895 458 ntBASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 AL356320.1-201ENST00000429616 163 ntBASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 AC018634.1-201ENST00000437554 401 ntBASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 AC009238.1-201ENST00000442165 424 ntBASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 AC009237.6-201ENST00000446969 424 ntBASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 AC074290.1-201ENST00000448883 135 ntBASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-667P-201ENST00000517186 102 ntBASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 AL109918.3-201ENST00000603072 338 ntBASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 NAA50-211ENST00000630058 177 ntTSL 5 BASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 AC135776.4-201ENST00000624300 1904 ntBASIC2.64□□□□□ -1.99
PCDHA1Q9Y5I3 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.63□□□□□ -1.99
PCDHA1Q9Y5I3 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
PCDHA1Q9Y5I3 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.63□□□□□ -1.99
PCDHA1Q9Y5I3 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.63□□□□□ -1.99
PCDHA1Q9Y5I3 RNU1-91P-201ENST00000364746 163 ntBASIC2.63□□□□□ -1.99
PCDHA1Q9Y5I3 SNORA72.2-201ENST00000365028 127 ntBASIC2.63□□□□□ -1.99
PCDHA1Q9Y5I3 RNU1-51P-201ENST00000365345 176 ntBASIC2.63□□□□□ -1.99
PCDHA1Q9Y5I3 DEFA7P-201ENST00000382676 285 ntBASIC2.63□□□□□ -1.99
PCDHA1Q9Y5I3 Y_RNA.401-201ENST00000383965 117 ntBASIC2.63□□□□□ -1.99
PCDHA1Q9Y5I3 MIR215-201ENST00000384858 110 ntBASIC2.63□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.63□□□□□ -1.99
PCDHA1Q9Y5I3 MIR1185-2-201ENST00000408687 86 ntBASIC2.63□□□□□ -1.99
PCDHA1Q9Y5I3 RN7SKP192-201ENST00000411291 327 ntBASIC2.63□□□□□ -1.99
PCDHA1Q9Y5I3 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.63□□□□□ -1.99
PCDHA1Q9Y5I3 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.63□□□□□ -1.99
PCDHA1Q9Y5I3 AL137159.1-201ENST00000452808 512 ntBASIC2.63□□□□□ -1.99
PCDHA1Q9Y5I3 TRBVB-201ENST00000477100 408 ntBASIC2.63□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-948P-201ENST00000516374 107 ntBASIC2.63□□□□□ -1.99
PCDHA1Q9Y5I3 PRELID2P1-201ENST00000552837 301 ntBASIC2.63□□□□□ -1.99
PCDHA1Q9Y5I3 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.63□□□□□ -1.99
PCDHA1Q9Y5I3 AC127459.3-201ENST00000624328 466 ntBASIC2.63□□□□□ -1.99
PCDHA1Q9Y5I3 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
PCDHA1Q9Y5I3 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.62□□□□□ -1.99
PCDHA1Q9Y5I3 RNU4-90P-201ENST00000362773 141 ntBASIC2.62□□□□□ -1.99
PCDHA1Q9Y5I3 Y_RNA.101-201ENST00000363154 102 ntBASIC2.62□□□□□ -1.99
PCDHA1Q9Y5I3 RNU2-54P-201ENST00000410299 190 ntBASIC2.62□□□□□ -1.99
PCDHA1Q9Y5I3 RN7SKP223-201ENST00000410582 62 ntBASIC2.62□□□□□ -1.99
PCDHA1Q9Y5I3 AC123900.1-201ENST00000420390 96 ntBASIC2.62□□□□□ -1.99
PCDHA1Q9Y5I3 HSPE1P25-201ENST00000455484 251 ntBASIC2.62□□□□□ -1.99
PCDHA1Q9Y5I3 RNU7-57P-201ENST00000459540 60 ntBASIC2.62□□□□□ -1.99
PCDHA1Q9Y5I3 RNU2-34P-201ENST00000516534 121 ntBASIC2.62□□□□□ -1.99
PCDHA1Q9Y5I3 RNU6-826P-201ENST00000516827 104 ntBASIC2.62□□□□□ -1.99
PCDHA1Q9Y5I3 RNU7-110P-201ENST00000516891 62 ntBASIC2.62□□□□□ -1.99
PCDHA1Q9Y5I3 RNU2-12P-201ENST00000517216 168 ntBASIC2.62□□□□□ -1.99
PCDHA1Q9Y5I3 AL590240.4-201ENST00000616908 390 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms