Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 MIR4524B-201ENST00000581569 115 ntBASIC1.85□□□□□ -2.11
VPS28Q9UK41 AC092794.2-201ENST00000620933 563 ntBASIC1.85□□□□□ -2.11
VPS28Q9UK41 AL669831.3-213ENST00000636676 183 ntBASIC1.85□□□□□ -2.11
VPS28Q9UK41 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
VPS28Q9UK41 SNORA33-201ENST00000363664 130 ntBASIC1.84□□□□□ -2.11
VPS28Q9UK41 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.84□□□□□ -2.11
VPS28Q9UK41 MIR1267-201ENST00000408723 78 ntBASIC1.84□□□□□ -2.11
VPS28Q9UK41 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.84□□□□□ -2.11
VPS28Q9UK41 RPL31P63-201ENST00000422565 375 ntBASIC1.84□□□□□ -2.11
VPS28Q9UK41 MTND4P18-201ENST00000447010 465 ntBASIC1.84□□□□□ -2.11
VPS28Q9UK41 AC027575.1-201ENST00000481064 460 ntBASIC1.84□□□□□ -2.11
VPS28Q9UK41 RPS29P11-201ENST00000496507 171 ntBASIC1.84□□□□□ -2.11
VPS28Q9UK41 SNORA20.3-201ENST00000516880 132 ntBASIC1.84□□□□□ -2.11
VPS28Q9UK41 CYCSP23-201ENST00000519781 313 ntBASIC1.84□□□□□ -2.11
VPS28Q9UK41 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.84□□□□□ -2.11
VPS28Q9UK41 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
VPS28Q9UK41 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.83□□□□□ -2.12
VPS28Q9UK41 RNU6-1001P-201ENST00000411265 100 ntBASIC1.83□□□□□ -2.12
VPS28Q9UK41 AC138393.2-201ENST00000414742 246 ntBASIC1.83□□□□□ -2.12
VPS28Q9UK41 CYCSP49-201ENST00000420810 319 ntBASIC1.83□□□□□ -2.12
VPS28Q9UK41 AC092423.1-201ENST00000430165 186 ntBASIC1.83□□□□□ -2.12
VPS28Q9UK41 TOMM22P2-201ENST00000430735 237 ntBASIC1.83□□□□□ -2.12
VPS28Q9UK41 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.83□□□□□ -2.12
VPS28Q9UK41 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.83□□□□□ -2.12
VPS28Q9UK41 RPL26P26-201ENST00000480251 434 ntBASIC1.83□□□□□ -2.12
VPS28Q9UK41 RPL17P19-201ENST00000489069 552 ntBASIC1.83□□□□□ -2.12
VPS28Q9UK41 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.83□□□□□ -2.12
VPS28Q9UK41 RNU6-107P-201ENST00000516643 102 ntBASIC1.83□□□□□ -2.12
VPS28Q9UK41 HSBP1P1-201ENST00000555205 166 ntBASIC1.83□□□□□ -2.12
VPS28Q9UK41 AC015712.3-201ENST00000559380 164 ntBASIC1.83□□□□□ -2.12
VPS28Q9UK41 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.83□□□□□ -2.12
VPS28Q9UK41 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.83□□□□□ -2.12
VPS28Q9UK41 AC125232.2-201ENST00000592457 143 ntBASIC1.83□□□□□ -2.12
VPS28Q9UK41 AC022432.1-201ENST00000595739 310 ntBASIC1.83□□□□□ -2.12
VPS28Q9UK41 AC016727.1-205ENST00000605437 569 ntBASIC1.83□□□□□ -2.12
VPS28Q9UK41 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.83□□□□□ -2.12
VPS28Q9UK41 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.83□□□□□ -2.12
VPS28Q9UK41 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
VPS28Q9UK41 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
VPS28Q9UK41 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
VPS28Q9UK41 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
VPS28Q9UK41 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
VPS28Q9UK41 RNA5SP467-201ENST00000391274 118 ntBASIC1.82□□□□□ -2.12
VPS28Q9UK41 Y_RNA.595-201ENST00000410403 105 ntBASIC1.82□□□□□ -2.12
VPS28Q9UK41 RNU4-14P-201ENST00000410858 122 ntBASIC1.82□□□□□ -2.12
VPS28Q9UK41 RNU6-370P-201ENST00000411008 104 ntBASIC1.82□□□□□ -2.12
VPS28Q9UK41 JTBP1-201ENST00000441314 247 ntBASIC1.82□□□□□ -2.12
VPS28Q9UK41 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.82□□□□□ -2.12
VPS28Q9UK41 snoU13.9-201ENST00000458927 103 ntBASIC1.82□□□□□ -2.12
VPS28Q9UK41 APOOP3-201ENST00000536787 586 ntBASIC1.82□□□□□ -2.12
VPS28Q9UK41 AC024614.2-201ENST00000577584 372 ntBASIC1.82□□□□□ -2.12
VPS28Q9UK41 AC016925.2-201ENST00000605108 242 ntBASIC1.82□□□□□ -2.12
VPS28Q9UK41 AL359075.3-201ENST00000613288 217 ntBASIC1.82□□□□□ -2.12
VPS28Q9UK41 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.82□□□□□ -2.12
VPS28Q9UK41 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.82□□□□□ -2.12
VPS28Q9UK41 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
VPS28Q9UK41 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
VPS28Q9UK41 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
VPS28Q9UK41 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
VPS28Q9UK41 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.81□□□□□ -2.12
VPS28Q9UK41 RNU6-874P-201ENST00000362390 105 ntBASIC1.81□□□□□ -2.12
VPS28Q9UK41 RNU6-338P-201ENST00000383888 105 ntBASIC1.81□□□□□ -2.12
VPS28Q9UK41 AC073910.1-201ENST00000445047 438 ntBASIC1.81□□□□□ -2.12
VPS28Q9UK41 UQCRBP2-201ENST00000447827 297 ntBASIC1.81□□□□□ -2.12
VPS28Q9UK41 snoU13.27-201ENST00000459278 104 ntBASIC1.81□□□□□ -2.12
VPS28Q9UK41 AC005908.1-201ENST00000468701 347 ntBASIC1.81□□□□□ -2.12
VPS28Q9UK41 HMGN1P12-201ENST00000499125 195 ntBASIC1.81□□□□□ -2.12
VPS28Q9UK41 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.81□□□□□ -2.12
VPS28Q9UK41 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.81□□□□□ -2.12
VPS28Q9UK41 SNORA25.15-201ENST00000516487 89 ntBASIC1.81□□□□□ -2.12
VPS28Q9UK41 RNU1-142P-201ENST00000516682 145 ntBASIC1.81□□□□□ -2.12
VPS28Q9UK41 RNU6-1213P-201ENST00000517075 94 ntBASIC1.81□□□□□ -2.12
VPS28Q9UK41 AC091144.1-201ENST00000519573 138 ntBASIC1.81□□□□□ -2.12
VPS28Q9UK41 CBX3P4-201ENST00000538909 354 ntBASIC1.81□□□□□ -2.12
VPS28Q9UK41 AL137100.2-201ENST00000555786 315 ntBASIC1.81□□□□□ -2.12
VPS28Q9UK41 MIR3122-201ENST00000577243 73 ntBASIC1.81□□□□□ -2.12
VPS28Q9UK41 MIR8081-201ENST00000611533 95 ntBASIC1.81□□□□□ -2.12
VPS28Q9UK41 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.81□□□□□ -2.12
VPS28Q9UK41 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
VPS28Q9UK41 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.8□□□□□ -2.12
VPS28Q9UK41 RNU6-879P-201ENST00000364328 108 ntBASIC1.8□□□□□ -2.12
VPS28Q9UK41 SNORD48-201ENST00000364953 64 ntBASIC1.8□□□□□ -2.12
VPS28Q9UK41 Y_RNA.557-201ENST00000384680 107 ntBASIC1.8□□□□□ -2.12
VPS28Q9UK41 MIR329-1-201ENST00000385028 80 ntBASIC1.8□□□□□ -2.12
VPS28Q9UK41 COX6CP10-201ENST00000416832 224 ntBASIC1.8□□□□□ -2.12
VPS28Q9UK41 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.8□□□□□ -2.12
VPS28Q9UK41 MIR4419B-201ENST00000577260 68 ntBASIC1.8□□□□□ -2.12
VPS28Q9UK41 MIR5690-201ENST00000583739 73 ntBASIC1.8□□□□□ -2.12
VPS28Q9UK41 AL355073.2-201ENST00000612106 557 ntBASIC1.8□□□□□ -2.12
VPS28Q9UK41 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.8□□□□□ -2.12
VPS28Q9UK41 AC100821.1-201ENST00000523153 2479 ntBASIC1.79□□□□□ -2.12
VPS28Q9UK41 RNU6-1188P-201ENST00000363795 107 ntBASIC1.79□□□□□ -2.12
VPS28Q9UK41 RNU6-1283P-201ENST00000365314 105 ntBASIC1.79□□□□□ -2.12
VPS28Q9UK41 Y_RNA.358-201ENST00000365491 99 ntBASIC1.79□□□□□ -2.12
VPS28Q9UK41 AL163195.1-201ENST00000496941 348 ntBASIC1.79□□□□□ -2.12
VPS28Q9UK41 AC022868.1-201ENST00000517767 391 ntBASIC1.79□□□□□ -2.12
VPS28Q9UK41 MIR4285-201ENST00000581001 85 ntBASIC1.79□□□□□ -2.12
VPS28Q9UK41 AC113139.1-201ENST00000605049 239 ntBASIC1.79□□□□□ -2.12
VPS28Q9UK41 AC104260.1-201ENST00000616660 539 ntBASIC1.79□□□□□ -2.12
VPS28Q9UK41 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms