Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 RPL23AP3-201ENST00000453844 468 ntBASIC2.07□□□□□ -2.08
LIMA1Q9UHB6 RNU7-57P-201ENST00000459540 60 ntBASIC2.07□□□□□ -2.08
LIMA1Q9UHB6 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.07□□□□□ -2.08
LIMA1Q9UHB6 AC125232.2-201ENST00000592457 143 ntBASIC2.07□□□□□ -2.08
LIMA1Q9UHB6 MZT1P2-201ENST00000604387 248 ntBASIC2.07□□□□□ -2.08
LIMA1Q9UHB6 AC007485.1-201ENST00000616755 206 ntBASIC2.07□□□□□ -2.08
LIMA1Q9UHB6 AC087588.2-201ENST00000617667 426 ntBASIC2.07□□□□□ -2.08
LIMA1Q9UHB6 U1.36-201ENST00000620684 176 ntBASIC2.07□□□□□ -2.08
LIMA1Q9UHB6 AC064859.1-201ENST00000624741 174 ntBASIC2.07□□□□□ -2.08
LIMA1Q9UHB6 AC138305.3-201ENST00000624988 240 ntBASIC2.07□□□□□ -2.08
LIMA1Q9UHB6 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.06□□□□□ -2.08
LIMA1Q9UHB6 RNY3P11-201ENST00000364153 102 ntBASIC2.06□□□□□ -2.08
LIMA1Q9UHB6 SNORA22B-201ENST00000383876 138 ntBASIC2.06□□□□□ -2.08
LIMA1Q9UHB6 RNY1P14-201ENST00000384426 108 ntBASIC2.06□□□□□ -2.08
LIMA1Q9UHB6 RN7SKP223-201ENST00000410582 62 ntBASIC2.06□□□□□ -2.08
LIMA1Q9UHB6 RNU6-1001P-201ENST00000411265 100 ntBASIC2.06□□□□□ -2.08
LIMA1Q9UHB6 AL356379.1-201ENST00000414105 126 ntBASIC2.06□□□□□ -2.08
LIMA1Q9UHB6 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.06□□□□□ -2.08
LIMA1Q9UHB6 ATP5J2P3-201ENST00000451550 258 ntBASIC2.06□□□□□ -2.08
LIMA1Q9UHB6 U8.22-201ENST00000459141 133 ntBASIC2.06□□□□□ -2.08
LIMA1Q9UHB6 AL163540.1-201ENST00000485382 386 ntBASIC2.06□□□□□ -2.08
LIMA1Q9UHB6 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC2.06□□□□□ -2.08
LIMA1Q9UHB6 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.06□□□□□ -2.08
LIMA1Q9UHB6 Y_RNA.683-201ENST00000516508 93 ntBASIC2.06□□□□□ -2.08
LIMA1Q9UHB6 RN7SKP295-201ENST00000517264 153 ntBASIC2.06□□□□□ -2.08
LIMA1Q9UHB6 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.06□□□□□ -2.08
LIMA1Q9UHB6 AL162373.1-201ENST00000620433 407 ntBASIC2.06□□□□□ -2.08
LIMA1Q9UHB6 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.06□□□□□ -2.08
LIMA1Q9UHB6 MTND5P35-201ENST00000557537 1720 ntBASIC2.05□□□□□ -2.08
LIMA1Q9UHB6 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
LIMA1Q9UHB6 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.05□□□□□ -2.08
LIMA1Q9UHB6 U3.8-201ENST00000363675 217 ntBASIC2.05□□□□□ -2.08
LIMA1Q9UHB6 MIR625-201ENST00000385047 85 ntBASIC2.05□□□□□ -2.08
LIMA1Q9UHB6 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.05□□□□□ -2.08
LIMA1Q9UHB6 RNU6-1156P-201ENST00000410365 100 ntBASIC2.05□□□□□ -2.08
LIMA1Q9UHB6 RNU6-57P-201ENST00000411348 103 ntBASIC2.05□□□□□ -2.08
LIMA1Q9UHB6 MCFD2P1-201ENST00000417812 300 ntBASIC2.05□□□□□ -2.08
LIMA1Q9UHB6 AC060773.1-201ENST00000421698 310 ntBASIC2.05□□□□□ -2.08
LIMA1Q9UHB6 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
LIMA1Q9UHB6 AC010095.1-201ENST00000443543 144 ntBASIC2.05□□□□□ -2.08
LIMA1Q9UHB6 MTND4P19-201ENST00000446659 478 ntBASIC2.05□□□□□ -2.08
LIMA1Q9UHB6 RNVU1-2-201ENST00000516326 135 ntBASIC2.05□□□□□ -2.08
LIMA1Q9UHB6 SCARNA15.1-201ENST00000516384 125 ntBASIC2.05□□□□□ -2.08
LIMA1Q9UHB6 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.05□□□□□ -2.08
LIMA1Q9UHB6 AK6P2-201ENST00000549020 471 ntBASIC2.05□□□□□ -2.08
LIMA1Q9UHB6 SNORD58B-201ENST00000607313 66 ntBASIC2.05□□□□□ -2.08
LIMA1Q9UHB6 SDR42E1P4-201ENST00000620894 481 ntBASIC2.05□□□□□ -2.08
LIMA1Q9UHB6 snoZ196.1-201ENST00000625269 89 ntBASIC2.05□□□□□ -2.08
LIMA1Q9UHB6 AC245060.5-201ENST00000610778 3293 ntBASIC2.05□□□□□ -2.08
LIMA1Q9UHB6 CENPCP1-201ENST00000533085 2578 ntBASIC2.04□□□□□ -2.08
LIMA1Q9UHB6 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
LIMA1Q9UHB6 Y_RNA.28-201ENST00000362554 111 ntBASIC2.04□□□□□ -2.08
LIMA1Q9UHB6 SNORA16.1-201ENST00000364597 132 ntBASIC2.04□□□□□ -2.08
LIMA1Q9UHB6 RNU4-42P-201ENST00000364738 142 ntBASIC2.04□□□□□ -2.08
LIMA1Q9UHB6 SNORA8-201ENST00000384574 139 ntBASIC2.04□□□□□ -2.08
LIMA1Q9UHB6 MIR329-1-201ENST00000385028 80 ntBASIC2.04□□□□□ -2.08
LIMA1Q9UHB6 MIR548B-201ENST00000385247 97 ntBASIC2.04□□□□□ -2.08
LIMA1Q9UHB6 SNORA3.2-201ENST00000408221 125 ntBASIC2.04□□□□□ -2.08
LIMA1Q9UHB6 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.04□□□□□ -2.08
LIMA1Q9UHB6 NDUFB4P10-201ENST00000452541 359 ntBASIC2.04□□□□□ -2.08
LIMA1Q9UHB6 Y_RNA.661-201ENST00000516003 99 ntBASIC2.04□□□□□ -2.08
LIMA1Q9UHB6 RNU4-77P-201ENST00000516692 156 ntBASIC2.04□□□□□ -2.08
LIMA1Q9UHB6 AC022868.1-201ENST00000517767 391 ntBASIC2.04□□□□□ -2.08
LIMA1Q9UHB6 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.04□□□□□ -2.08
LIMA1Q9UHB6 AL359851.1-201ENST00000569460 4997 ntBASIC2.04□□□□□ -2.08
LIMA1Q9UHB6 MIR4513-201ENST00000581077 86 ntBASIC2.04□□□□□ -2.08
LIMA1Q9UHB6 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.04□□□□□ -2.08
LIMA1Q9UHB6 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.04□□□□□ -2.08
LIMA1Q9UHB6 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
LIMA1Q9UHB6 RNA5SP361-201ENST00000362686 118 ntBASIC2.03□□□□□ -2.08
LIMA1Q9UHB6 RNU6-879P-201ENST00000364328 108 ntBASIC2.03□□□□□ -2.08
LIMA1Q9UHB6 RNU1-115P-201ENST00000365329 160 ntBASIC2.03□□□□□ -2.08
LIMA1Q9UHB6 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
LIMA1Q9UHB6 DPH3P2-201ENST00000422618 250 ntBASIC2.03□□□□□ -2.08
LIMA1Q9UHB6 AC011406.1-201ENST00000512440 370 ntBASIC2.03□□□□□ -2.08
LIMA1Q9UHB6 RNU6-1041P-201ENST00000516254 102 ntBASIC2.03□□□□□ -2.08
LIMA1Q9UHB6 RNU7-4P-201ENST00000516961 62 ntBASIC2.03□□□□□ -2.08
LIMA1Q9UHB6 SNORD116.3-201ENST00000517176 78 ntBASIC2.03□□□□□ -2.08
LIMA1Q9UHB6 MIR4299-201ENST00000577899 72 ntBASIC2.03□□□□□ -2.08
LIMA1Q9UHB6 AC092447.9-201ENST00000603395 144 ntBASIC2.03□□□□□ -2.08
LIMA1Q9UHB6 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.03□□□□□ -2.08
LIMA1Q9UHB6 AC040896.1-201ENST00000613819 479 ntBASIC2.03□□□□□ -2.08
LIMA1Q9UHB6 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.03□□□□□ -2.08
LIMA1Q9UHB6 AC006001.4-201ENST00000622243 395 ntBASIC2.03□□□□□ -2.08
LIMA1Q9UHB6 MIR4272-201ENST00000635924 64 ntBASIC2.03□□□□□ -2.08
LIMA1Q9UHB6 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.08
LIMA1Q9UHB6 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.08
LIMA1Q9UHB6 Y_RNA.80-201ENST00000362996 102 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 SNORD48-201ENST00000364953 64 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 SNORA33.2-201ENST00000365413 134 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 Y_RNA.428-201ENST00000384078 102 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 Y_RNA.485-201ENST00000384395 102 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 AC096644.2-201ENST00000429278 159 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 AL160004.2-201ENST00000432935 350 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 AC099799.1-201ENST00000439809 192 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 RNA5SP233-201ENST00000459153 113 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 RNU6-221P-201ENST00000459541 99 ntBASIC2.02□□□□□ -2.09
LIMA1Q9UHB6 YWHAEP4-201ENST00000505390 198 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 126.5 ms