Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 RNU6-222P-201ENST00000362438 107 ntBASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 SNORA7.1-201ENST00000363750 139 ntBASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 RNA5SP467-201ENST00000391274 118 ntBASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 MIR1267-201ENST00000408723 78 ntBASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 Y_RNA.594-201ENST00000410373 140 ntBASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 RNU6-1050P-201ENST00000410388 107 ntBASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 MTND3P23-201ENST00000431980 347 ntBASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 AC073910.1-201ENST00000445047 438 ntBASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 FGF7P6-202ENST00000451282 293 ntBASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 AC009474.2-201ENST00000451383 136 ntBASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 RNU6-221P-201ENST00000459541 99 ntBASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 RPL26P26-201ENST00000480251 434 ntBASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 Y_RNA.670-201ENST00000516255 105 ntBASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 MIR5695-201ENST00000579717 85 ntBASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 AC095038.3-201ENST00000634439 195 ntBASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
VPS54Q9P1Q0 Y_RNA.106-201ENST00000363189 100 ntBASIC1.48□□□□□ -2.17
VPS54Q9P1Q0 Y_RNA.179-201ENST00000363844 90 ntBASIC1.48□□□□□ -2.17
VPS54Q9P1Q0 RNU6-280P-201ENST00000364145 104 ntBASIC1.48□□□□□ -2.17
VPS54Q9P1Q0 SNORA63D-201ENST00000364359 132 ntBASIC1.48□□□□□ -2.17
VPS54Q9P1Q0 RNU6-1240P-201ENST00000365155 104 ntBASIC1.48□□□□□ -2.17
VPS54Q9P1Q0 Y_RNA.339-201ENST00000365325 102 ntBASIC1.48□□□□□ -2.17
VPS54Q9P1Q0 RNU6-793P-201ENST00000384233 104 ntBASIC1.48□□□□□ -2.17
VPS54Q9P1Q0 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.48□□□□□ -2.17
VPS54Q9P1Q0 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.48□□□□□ -2.17
VPS54Q9P1Q0 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
VPS54Q9P1Q0 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.48□□□□□ -2.17
VPS54Q9P1Q0 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.48□□□□□ -2.17
VPS54Q9P1Q0 RNU6-1146P-201ENST00000516282 102 ntBASIC1.48□□□□□ -2.17
VPS54Q9P1Q0 RNU6-1016P-201ENST00000516689 94 ntBASIC1.48□□□□□ -2.17
VPS54Q9P1Q0 RNU7-30P-201ENST00000516835 62 ntBASIC1.48□□□□□ -2.17
VPS54Q9P1Q0 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.48□□□□□ -2.17
VPS54Q9P1Q0 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.48□□□□□ -2.17
VPS54Q9P1Q0 MIR3660-201ENST00000584845 100 ntBASIC1.48□□□□□ -2.17
VPS54Q9P1Q0 AC005014.2-201ENST00000607795 599 ntBASIC1.48□□□□□ -2.17
VPS54Q9P1Q0 AC092794.1-201ENST00000612734 582 ntBASIC1.48□□□□□ -2.17
VPS54Q9P1Q0 CASC19-280ENST00000642102 1351 ntBASIC1.47□□□□□ -2.17
VPS54Q9P1Q0 Y_RNA.72-201ENST00000362894 103 ntBASIC1.47□□□□□ -2.17
VPS54Q9P1Q0 RNU6-271P-201ENST00000363858 105 ntBASIC1.47□□□□□ -2.17
VPS54Q9P1Q0 SNORA4.2-201ENST00000365313 147 ntBASIC1.47□□□□□ -2.17
VPS54Q9P1Q0 SNORA40.6-201ENST00000391153 128 ntBASIC1.47□□□□□ -2.17
VPS54Q9P1Q0 MIR1185-2-201ENST00000408687 86 ntBASIC1.47□□□□□ -2.17
VPS54Q9P1Q0 RNU6ATAC25P-201ENST00000408798 117 ntBASIC1.47□□□□□ -2.17
VPS54Q9P1Q0 USMG5P1-201ENST00000425964 177 ntBASIC1.47□□□□□ -2.17
VPS54Q9P1Q0 JTBP1-201ENST00000441314 247 ntBASIC1.47□□□□□ -2.17
VPS54Q9P1Q0 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.47□□□□□ -2.17
VPS54Q9P1Q0 HSPE1P24-201ENST00000450782 238 ntBASIC1.47□□□□□ -2.17
VPS54Q9P1Q0 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.47□□□□□ -2.17
VPS54Q9P1Q0 Y_RNA.706-201ENST00000516933 99 ntBASIC1.47□□□□□ -2.17
VPS54Q9P1Q0 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.47□□□□□ -2.17
VPS54Q9P1Q0 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.47□□□□□ -2.17
VPS54Q9P1Q0 U6atac.1-201ENST00000616025 117 ntBASIC1.47□□□□□ -2.17
VPS54Q9P1Q0 AC100821.1-201ENST00000523153 2479 ntBASIC1.47□□□□□ -2.17
VPS54Q9P1Q0 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
VPS54Q9P1Q0 MTND5P16-201ENST00000460269 1703 ntBASIC1.46□□□□□ -2.18
VPS54Q9P1Q0 Y_RNA.67-201ENST00000362870 100 ntBASIC1.46□□□□□ -2.18
VPS54Q9P1Q0 U3.8-201ENST00000363675 217 ntBASIC1.46□□□□□ -2.18
VPS54Q9P1Q0 Y_RNA.248-201ENST00000364501 109 ntBASIC1.46□□□□□ -2.18
VPS54Q9P1Q0 RNU6-281P-201ENST00000384212 103 ntBASIC1.46□□□□□ -2.18
VPS54Q9P1Q0 Y_RNA.490-201ENST00000384413 102 ntBASIC1.46□□□□□ -2.18
VPS54Q9P1Q0 RNU6-331P-201ENST00000384724 107 ntBASIC1.46□□□□□ -2.18
VPS54Q9P1Q0 RNU1-78P-201ENST00000391248 165 ntBASIC1.46□□□□□ -2.18
VPS54Q9P1Q0 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
VPS54Q9P1Q0 RPL37P10-201ENST00000412884 288 ntBASIC1.46□□□□□ -2.18
VPS54Q9P1Q0 AC107399.1-201ENST00000451226 265 ntBASIC1.46□□□□□ -2.18
VPS54Q9P1Q0 RPS29P23-201ENST00000458635 123 ntBASIC1.46□□□□□ -2.18
VPS54Q9P1Q0 RPL7P42-201ENST00000481005 679 ntBASIC1.46□□□□□ -2.18
VPS54Q9P1Q0 AL163195.1-201ENST00000496941 348 ntBASIC1.46□□□□□ -2.18
VPS54Q9P1Q0 RNA5SP481-201ENST00000516814 122 ntBASIC1.46□□□□□ -2.18
VPS54Q9P1Q0 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.46□□□□□ -2.18
VPS54Q9P1Q0 AC100812.1-201ENST00000607622 580 ntBASIC1.46□□□□□ -2.18
VPS54Q9P1Q0 AC009229.3-201ENST00000608056 282 ntBASIC1.46□□□□□ -2.18
VPS54Q9P1Q0 Y_RNA.160-201ENST00000363677 92 ntBASIC1.45□□□□□ -2.18
VPS54Q9P1Q0 Y_RNA.404-201ENST00000383978 102 ntBASIC1.45□□□□□ -2.18
VPS54Q9P1Q0 RNU6-767P-201ENST00000384132 107 ntBASIC1.45□□□□□ -2.18
VPS54Q9P1Q0 RNU6-601P-201ENST00000384540 107 ntBASIC1.45□□□□□ -2.18
VPS54Q9P1Q0 AC008134.1-201ENST00000420943 193 ntBASIC1.45□□□□□ -2.18
VPS54Q9P1Q0 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.45□□□□□ -2.18
VPS54Q9P1Q0 FTH1P12-201ENST00000432137 551 ntBASIC1.45□□□□□ -2.18
VPS54Q9P1Q0 AL353997.1-201ENST00000432936 108 ntBASIC1.45□□□□□ -2.18
VPS54Q9P1Q0 MTND3P10-201ENST00000450967 341 ntBASIC1.45□□□□□ -2.18
VPS54Q9P1Q0 AC093303.1-201ENST00000514549 295 ntBASIC1.45□□□□□ -2.18
VPS54Q9P1Q0 Y_RNA.708-201ENST00000516950 96 ntBASIC1.45□□□□□ -2.18
VPS54Q9P1Q0 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.45□□□□□ -2.18
VPS54Q9P1Q0 FRG2DP-202ENST00000566967 323 ntBASIC1.45□□□□□ -2.18
VPS54Q9P1Q0 MIR5701-3-201ENST00000578890 82 ntBASIC1.45□□□□□ -2.18
VPS54Q9P1Q0 MIR5701-1-201ENST00000585138 82 ntBASIC1.45□□□□□ -2.18
VPS54Q9P1Q0 AP001485.1-201ENST00000604799 199 ntBASIC1.45□□□□□ -2.18
VPS54Q9P1Q0 AC010999.1-201ENST00000611856 324 ntBASIC1.45□□□□□ -2.18
VPS54Q9P1Q0 MIR5701-2-201ENST00000615634 82 ntBASIC1.45□□□□□ -2.18
VPS54Q9P1Q0 MTND5P35-201ENST00000557537 1720 ntBASIC1.45□□□□□ -2.18
VPS54Q9P1Q0 Y_RNA.88-201ENST00000363029 99 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 RNY1P16-201ENST00000363063 111 ntBASIC1.44□□□□□ -2.18
VPS54Q9P1Q0 Y_RNA.184-201ENST00000363884 108 ntBASIC1.44□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms