Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 RNU6-988P-201ENST00000519081 107 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 EIF4A1P12-201ENST00000551910 141 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 AC090617.3-201ENST00000573670 475 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 AC008749.1-201ENST00000597650 306 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 AC090517.3-201ENST00000625170 141 ntBASIC1.94□□□□□ -2.1
UPF3AQ9H1J1 CENPCP1-201ENST00000533085 2578 ntBASIC1.93□□□□□ -2.1
UPF3AQ9H1J1 RNA5SP361-201ENST00000362686 118 ntBASIC1.93□□□□□ -2.1
UPF3AQ9H1J1 RNU6-281P-201ENST00000384212 103 ntBASIC1.93□□□□□ -2.1
UPF3AQ9H1J1 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
UPF3AQ9H1J1 AL590004.1-201ENST00000405321 300 ntBASIC1.93□□□□□ -2.1
UPF3AQ9H1J1 AL118496.2-201ENST00000448300 230 ntBASIC1.93□□□□□ -2.1
UPF3AQ9H1J1 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.93□□□□□ -2.1
UPF3AQ9H1J1 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.93□□□□□ -2.1
UPF3AQ9H1J1 SNORA25.10-201ENST00000515926 124 ntBASIC1.93□□□□□ -2.1
UPF3AQ9H1J1 RNU6-1114P-201ENST00000516022 107 ntBASIC1.93□□□□□ -2.1
UPF3AQ9H1J1 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.93□□□□□ -2.1
UPF3AQ9H1J1 AC006600.1-201ENST00000572529 153 ntBASIC1.93□□□□□ -2.1
UPF3AQ9H1J1 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.93□□□□□ -2.1
UPF3AQ9H1J1 AL138963.2-201ENST00000605137 226 ntBASIC1.93□□□□□ -2.1
UPF3AQ9H1J1 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.93□□□□□ -2.1
UPF3AQ9H1J1 AL132822.1-201ENST00000617063 513 ntBASIC1.93□□□□□ -2.1
UPF3AQ9H1J1 U2.1-201ENST00000618978 145 ntBASIC1.93□□□□□ -2.1
UPF3AQ9H1J1 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
UPF3AQ9H1J1 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
UPF3AQ9H1J1 ZNF204P-201ENST00000416749 2397 ntBASIC1.93□□□□□ -2.1
UPF3AQ9H1J1 BX322639.1-202ENST00000423987 2213 ntBASIC1.93□□□□□ -2.1
UPF3AQ9H1J1 AC005592.1-201ENST00000566527 1640 ntBASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 MIR337-201ENST00000362281 93 ntBASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 RNU6-1301P-201ENST00000362724 104 ntBASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 U3.9-201ENST00000363823 204 ntBASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 RNU6-873P-201ENST00000363833 107 ntBASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 RNU6-450P-201ENST00000364654 107 ntBASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 RNU6-738P-201ENST00000384531 106 ntBASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 MIR606-201ENST00000384851 96 ntBASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 RNU6-1001P-201ENST00000411265 100 ntBASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 USP9YP16-201ENST00000430287 407 ntBASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 MTCO3P8-201ENST00000453691 755 ntBASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 USP9YP23-201ENST00000455085 407 ntBASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 AC018868.1-201ENST00000491307 315 ntBASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 AC010469.2-201ENST00000496412 480 ntBASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 RNU6-586P-201ENST00000517265 104 ntBASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 CBX3P4-201ENST00000538909 354 ntBASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 AL442663.2-201ENST00000554385 511 ntBASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 AL360085.1-201ENST00000604713 532 ntBASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 MIR8070-201ENST00000616510 88 ntBASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 AC137590.2-201ENST00000619709 240 ntBASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.92□□□□□ -2.1
UPF3AQ9H1J1 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 Y_RNA.39-201ENST00000362620 98 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 Y_RNA.158-201ENST00000363651 101 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 RNU6-137P-201ENST00000363680 108 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 RNU4-56P-201ENST00000364700 142 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 SNORA18.2-201ENST00000383865 132 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 RNU6-1160P-201ENST00000384546 104 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 Y_RNA.527-201ENST00000384573 102 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 MIR29B2-201ENST00000385055 81 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 Y_RNA.605-201ENST00000410577 105 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 RNA5SP504-201ENST00000410676 117 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 RNU7-95P-201ENST00000459222 64 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 TRMT112P2-201ENST00000512910 132 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 RNU6-475P-201ENST00000516073 104 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 AC022868.1-201ENST00000517767 391 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 AC144568.1-201ENST00000520139 137 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 AC018630.3-201ENST00000542637 96 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 MIR5695-201ENST00000579717 85 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 VN1R91P-201ENST00000594377 169 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 7SK.7-201ENST00000603504 247 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 AL357075.2-201ENST00000614906 189 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 MIR1248-201ENST00000629190 106 ntBASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.91□□□□□ -2.1
UPF3AQ9H1J1 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.9□□□□□ -2.1
UPF3AQ9H1J1 MIR329-1-201ENST00000385028 80 ntBASIC1.9□□□□□ -2.11
UPF3AQ9H1J1 RNU6-823P-201ENST00000391042 103 ntBASIC1.9□□□□□ -2.11
UPF3AQ9H1J1 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
UPF3AQ9H1J1 AC114482.1-201ENST00000418010 247 ntBASIC1.9□□□□□ -2.11
UPF3AQ9H1J1 HMGN2P19-201ENST00000425149 265 ntBASIC1.9□□□□□ -2.11
UPF3AQ9H1J1 AL161788.1-201ENST00000441805 169 ntBASIC1.9□□□□□ -2.11
UPF3AQ9H1J1 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.9□□□□□ -2.11
UPF3AQ9H1J1 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.9□□□□□ -2.11
UPF3AQ9H1J1 AC055731.1-201ENST00000474387 401 ntBASIC1.9□□□□□ -2.11
UPF3AQ9H1J1 AC091179.3-201ENST00000474761 144 ntBASIC1.9□□□□□ -2.11
UPF3AQ9H1J1 ATP5EP1-201ENST00000510257 156 ntBASIC1.9□□□□□ -2.11
UPF3AQ9H1J1 RNU6-911P-201ENST00000516523 104 ntBASIC1.9□□□□□ -2.11
UPF3AQ9H1J1 SNORA40.14-201ENST00000516543 86 ntBASIC1.9□□□□□ -2.11
UPF3AQ9H1J1 RNU6-965P-201ENST00000516721 96 ntBASIC1.9□□□□□ -2.11
UPF3AQ9H1J1 RNU6-1098P-201ENST00000516772 96 ntBASIC1.9□□□□□ -2.11
UPF3AQ9H1J1 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.9□□□□□ -2.11
UPF3AQ9H1J1 AL442163.3-201ENST00000554110 156 ntBASIC1.9□□□□□ -2.11
UPF3AQ9H1J1 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.9□□□□□ -2.11
UPF3AQ9H1J1 MIR5739-201ENST00000619803 80 ntBASIC1.9□□□□□ -2.11
UPF3AQ9H1J1 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
UPF3AQ9H1J1 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 151.7 ms