Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC0.1□□□□□ -2.39
TRIM4Q9C037 AC005771.1-201ENST00000585581 349 ntBASIC0.1□□□□□ -2.39
TRIM4Q9C037 SEPT14P17-201ENST00000617978 177 ntBASIC0.1□□□□□ -2.39
TRIM4Q9C037 U6.73-201ENST00000619194 103 ntBASIC0.1□□□□□ -2.39
TRIM4Q9C037 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC0.09□□□□□ -2.4
TRIM4Q9C037 RNU5F-6P-201ENST00000362979 116 ntBASIC0.09□□□□□ -2.4
TRIM4Q9C037 Y_RNA.367-201ENST00000365544 101 ntBASIC0.09□□□□□ -2.4
TRIM4Q9C037 RNU6-393P-201ENST00000384475 107 ntBASIC0.09□□□□□ -2.4
TRIM4Q9C037 RNA5SP266-201ENST00000410273 108 ntBASIC0.09□□□□□ -2.4
TRIM4Q9C037 RPS26P42-201ENST00000413485 326 ntBASIC0.09□□□□□ -2.4
TRIM4Q9C037 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC0.09□□□□□ -2.4
TRIM4Q9C037 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC0.09□□□□□ -2.4
TRIM4Q9C037 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC0.09□□□□□ -2.4
TRIM4Q9C037 RNU2-69P-201ENST00000516061 100 ntBASIC0.09□□□□□ -2.4
TRIM4Q9C037 Y_RNA.672-201ENST00000516289 104 ntBASIC0.09□□□□□ -2.4
TRIM4Q9C037 AL136317.1-201ENST00000612653 226 ntBASIC0.09□□□□□ -2.4
TRIM4Q9C037 MIR371B-201ENST00000638082 66 ntBASIC0.09□□□□□ -2.4
TRIM4Q9C037 SNORD95.1-201ENST00000364099 68 ntBASIC0.08□□□□□ -2.4
TRIM4Q9C037 RNU6-266P-201ENST00000364225 107 ntBASIC0.08□□□□□ -2.4
TRIM4Q9C037 RNU6-83P-201ENST00000384568 112 ntBASIC0.08□□□□□ -2.4
TRIM4Q9C037 MIR1295A-201ENST00000408463 79 ntBASIC0.08□□□□□ -2.4
TRIM4Q9C037 AL663109.1-201ENST00000411498 844 ntBASIC0.08□□□□□ -2.4
TRIM4Q9C037 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.08□□□□□ -2.4
TRIM4Q9C037 AC010493.1-201ENST00000513479 292 ntBASIC0.08□□□□□ -2.4
TRIM4Q9C037 RSL24D1P11-201ENST00000591045 491 ntBASIC0.08□□□□□ -2.4
TRIM4Q9C037 RNU6-94P-201ENST00000607728 107 ntBASIC0.08□□□□□ -2.4
TRIM4Q9C037 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC0.08□□□□□ -2.4
TRIM4Q9C037 AC007014.2-201ENST00000615581 479 ntBASIC0.08□□□□□ -2.4
TRIM4Q9C037 AC009878.1-201ENST00000621819 340 ntBASIC0.08□□□□□ -2.4
TRIM4Q9C037 AL049777.1-201ENST00000622740 518 ntBASIC0.08□□□□□ -2.4
TRIM4Q9C037 AC008873.1-201ENST00000625051 138 ntBASIC0.08□□□□□ -2.4
TRIM4Q9C037 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.07□□□□□ -2.4
TRIM4Q9C037 SNORD114-16-201ENST00000363044 70 ntBASIC0.07□□□□□ -2.4
TRIM4Q9C037 RNU6-793P-201ENST00000384233 104 ntBASIC0.07□□□□□ -2.4
TRIM4Q9C037 RNU6-434P-201ENST00000384376 107 ntBASIC0.07□□□□□ -2.4
TRIM4Q9C037 RNU7-12P-201ENST00000516030 62 ntBASIC0.07□□□□□ -2.4
TRIM4Q9C037 AC090572.1-201ENST00000519251 160 ntBASIC0.07□□□□□ -2.4
TRIM4Q9C037 AL117336.2-201ENST00000602435 335 ntBASIC0.07□□□□□ -2.4
TRIM4Q9C037 AC068790.2-201ENST00000602601 557 ntBASIC0.07□□□□□ -2.4
TRIM4Q9C037 MIR103A2-201ENST00000362154 78 ntBASIC0.06□□□□□ -2.4
TRIM4Q9C037 RNU5B-2P-201ENST00000363036 113 ntBASIC0.06□□□□□ -2.4
TRIM4Q9C037 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.06□□□□□ -2.4
TRIM4Q9C037 RNU6V-201ENST00000384105 107 ntBASIC0.06□□□□□ -2.4
TRIM4Q9C037 RNU6-1200P-201ENST00000384162 107 ntBASIC0.06□□□□□ -2.4
TRIM4Q9C037 SNORD70.1-201ENST00000391007 85 ntBASIC0.06□□□□□ -2.4
TRIM4Q9C037 RNU6-177P-201ENST00000411257 104 ntBASIC0.06□□□□□ -2.4
TRIM4Q9C037 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.06□□□□□ -2.4
TRIM4Q9C037 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC0.06□□□□□ -2.4
TRIM4Q9C037 USP9YP29-201ENST00000445112 563 ntBASIC0.06□□□□□ -2.4
TRIM4Q9C037 RNA5SP454-201ENST00000517231 127 ntBASIC0.06□□□□□ -2.4
TRIM4Q9C037 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC0.06□□□□□ -2.4
TRIM4Q9C037 AP003716.2-201ENST00000528260 108 ntBASIC0.06□□□□□ -2.4
TRIM4Q9C037 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC0.06□□□□□ -2.4
TRIM4Q9C037 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.06□□□□□ -2.4
TRIM4Q9C037 MIR4775-201ENST00000581168 75 ntBASIC0.06□□□□□ -2.4
TRIM4Q9C037 AC025449.1-201ENST00000603896 529 ntBASIC0.06□□□□□ -2.4
TRIM4Q9C037 SNRPGP20-201ENST00000604477 205 ntBASIC0.06□□□□□ -2.4
TRIM4Q9C037 AC122133.1-201ENST00000613964 233 ntBASIC0.06□□□□□ -2.4
TRIM4Q9C037 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.06□□□□□ -2.4
TRIM4Q9C037 AC099654.13-201ENST00000639774 207 ntBASIC0.06□□□□□ -2.4
TRIM4Q9C037 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.05□□□□□ -2.4
TRIM4Q9C037 MIR103A1-201ENST00000362165 78 ntBASIC0.05□□□□□ -2.4
TRIM4Q9C037 RNU6-501P-201ENST00000364072 100 ntBASIC0.05□□□□□ -2.4
TRIM4Q9C037 Y_RNA.265-201ENST00000364677 108 ntBASIC0.05□□□□□ -2.4
TRIM4Q9C037 RNU6-302P-201ENST00000365249 107 ntBASIC0.05□□□□□ -2.4
TRIM4Q9C037 SNORD105-201ENST00000386910 85 ntBASIC0.05□□□□□ -2.4
TRIM4Q9C037 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.05□□□□□ -2.4
TRIM4Q9C037 RNA5SP494-201ENST00000410653 129 ntBASIC0.05□□□□□ -2.4
TRIM4Q9C037 RNU4-46P-201ENST00000410818 138 ntBASIC0.05□□□□□ -2.4
TRIM4Q9C037 AL365184.2-201ENST00000431139 435 ntBASIC0.05□□□□□ -2.4
TRIM4Q9C037 AC104850.1-201ENST00000435940 476 ntBASIC0.05□□□□□ -2.4
TRIM4Q9C037 AC093019.1-201ENST00000443135 252 ntBASIC0.05□□□□□ -2.4
TRIM4Q9C037 EPS15P1-201ENST00000448836 336 ntBASIC0.05□□□□□ -2.4
TRIM4Q9C037 AC079140.5-201ENST00000507882 310 ntBASIC0.05□□□□□ -2.4
TRIM4Q9C037 RPL39P5-202ENST00000512505 151 ntBASIC0.05□□□□□ -2.4
TRIM4Q9C037 RNA5SP67-201ENST00000516422 131 ntBASIC0.05□□□□□ -2.4
TRIM4Q9C037 AGGF1P4-201ENST00000568249 801 ntBASIC0.05□□□□□ -2.4
TRIM4Q9C037 MIR4667-201ENST00000578933 66 ntBASIC0.05□□□□□ -2.4
TRIM4Q9C037 MIR4431-201ENST00000579990 94 ntBASIC0.05□□□□□ -2.4
TRIM4Q9C037 AC018714.1-201ENST00000605028 208 ntBASIC0.05□□□□□ -2.4
TRIM4Q9C037 AL390237.1-201ENST00000404226 1415 ntBASIC0.04□□□□□ -2.4
TRIM4Q9C037 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.04□□□□□ -2.4
TRIM4Q9C037 MTCO2P18-201ENST00000457151 658 ntBASIC0.04□□□□□ -2.4
TRIM4Q9C037 AC007215.1-201ENST00000464893 276 ntBASIC0.04□□□□□ -2.4
TRIM4Q9C037 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC0.04□□□□□ -2.4
TRIM4Q9C037 RNU1-117P-201ENST00000517041 158 ntBASIC0.04□□□□□ -2.4
TRIM4Q9C037 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC0.04□□□□□ -2.4
TRIM4Q9C037 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC0.04□□□□□ -2.4
TRIM4Q9C037 PCMTD1P2-201ENST00000565017 355 ntBASIC0.04□□□□□ -2.4
TRIM4Q9C037 MTRNR2L2-201ENST00000604882 87 ntBASIC0.04□□□□□ -2.4
TRIM4Q9C037 AC139792.3-201ENST00000623525 224 ntBASIC0.04□□□□□ -2.4
TRIM4Q9C037 Y_RNA.572-201ENST00000384757 98 ntBASIC0.03□□□□□ -2.4
TRIM4Q9C037 MIR526A1-201ENST00000384897 85 ntBASIC0.03□□□□□ -2.4
TRIM4Q9C037 RNA5SP219-201ENST00000390940 113 ntBASIC0.03□□□□□ -2.4
TRIM4Q9C037 AL355143.1-201ENST00000407101 841 ntBASIC0.03□□□□□ -2.4
TRIM4Q9C037 MIR1185-1-201ENST00000408598 86 ntBASIC0.03□□□□□ -2.4
TRIM4Q9C037 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC0.03□□□□□ -2.4
TRIM4Q9C037 AP000870.1-201ENST00000472927 406 ntBASIC0.03□□□□□ -2.4
TRIM4Q9C037 SCARNA16.5-201ENST00000517114 183 ntBASIC0.03□□□□□ -2.4
TRIM4Q9C037 FRG2DP-202ENST00000566967 323 ntBASIC0.03□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 215.1 ms