Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RNU6-874P-201ENST00000362390 105 ntBASIC1.43□□□□□ -2.18
VPS39Q96JC1 SNORD115-8-201ENST00000363856 82 ntBASIC1.43□□□□□ -2.18
VPS39Q96JC1 RNU4-13P-201ENST00000364019 141 ntBASIC1.43□□□□□ -2.18
VPS39Q96JC1 SNORA63D-201ENST00000364359 132 ntBASIC1.43□□□□□ -2.18
VPS39Q96JC1 Y_RNA.279-201ENST00000364763 95 ntBASIC1.43□□□□□ -2.18
VPS39Q96JC1 SNORD115-38-201ENST00000365037 82 ntBASIC1.43□□□□□ -2.18
VPS39Q96JC1 RNU6-767P-201ENST00000384132 107 ntBASIC1.43□□□□□ -2.18
VPS39Q96JC1 MIR10B-201ENST00000385011 110 ntBASIC1.43□□□□□ -2.18
VPS39Q96JC1 RNU6-159P-201ENST00000391080 106 ntBASIC1.43□□□□□ -2.18
VPS39Q96JC1 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.43□□□□□ -2.18
VPS39Q96JC1 AC074085.1-201ENST00000413598 418 ntBASIC1.43□□□□□ -2.18
VPS39Q96JC1 RPS27P16-201ENST00000425758 201 ntBASIC1.43□□□□□ -2.18
VPS39Q96JC1 MTND3P23-201ENST00000431980 347 ntBASIC1.43□□□□□ -2.18
VPS39Q96JC1 SNRPGP13-201ENST00000442212 177 ntBASIC1.43□□□□□ -2.18
VPS39Q96JC1 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.43□□□□□ -2.18
VPS39Q96JC1 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.43□□□□□ -2.18
VPS39Q96JC1 AC091179.3-201ENST00000474761 144 ntBASIC1.43□□□□□ -2.18
VPS39Q96JC1 AL590705.4-201ENST00000532209 134 ntBASIC1.43□□□□□ -2.18
VPS39Q96JC1 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC1.43□□□□□ -2.18
VPS39Q96JC1 MZT1P2-201ENST00000604387 248 ntBASIC1.43□□□□□ -2.18
VPS39Q96JC1 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.43□□□□□ -2.18
VPS39Q96JC1 AC095038.3-201ENST00000634439 195 ntBASIC1.43□□□□□ -2.18
VPS39Q96JC1 MIR338-201ENST00000636369 67 ntBASIC1.43□□□□□ -2.18
VPS39Q96JC1 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.43□□□□□ -2.18
VPS39Q96JC1 RNU6-845P-201ENST00000362578 103 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 U8.1-201ENST00000362843 134 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 RNU1-17P-201ENST00000363022 152 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 Y_RNA.106-201ENST00000363189 100 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 RNU6-60P-201ENST00000364792 103 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 Y_RNA.287-201ENST00000364853 94 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 RNU6-601P-201ENST00000384540 107 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 RNU6-417P-201ENST00000384712 107 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 MIR586-201ENST00000385035 97 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 RNU6-482P-201ENST00000391068 107 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 RNA5SP467-201ENST00000391274 118 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.42□□□□□ -2.18
VPS39Q96JC1 U8.22-201ENST00000459141 133 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 RNU7-175P-201ENST00000515915 61 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 RNU6-948P-201ENST00000516374 107 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 RNU6-1016P-201ENST00000516689 94 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 AC015720.1-201ENST00000565251 277 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 MIR5695-201ENST00000579717 85 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 MIR3937-201ENST00000580135 106 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 AL078604.3-201ENST00000615580 211 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 AL353997.5-201ENST00000618886 171 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 MTND5P35-201ENST00000557537 1720 ntBASIC1.42□□□□□ -2.18
VPS39Q96JC1 Y_RNA.72-201ENST00000362894 103 ntBASIC1.41□□□□□ -2.18
VPS39Q96JC1 HMGN2P34-201ENST00000437647 269 ntBASIC1.41□□□□□ -2.18
VPS39Q96JC1 RNU6-344P-201ENST00000516635 111 ntBASIC1.41□□□□□ -2.18
VPS39Q96JC1 RNA5SP54-201ENST00000516951 92 ntBASIC1.41□□□□□ -2.18
VPS39Q96JC1 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.41□□□□□ -2.18
VPS39Q96JC1 AL078596.1-201ENST00000624856 447 ntBASIC1.41□□□□□ -2.18
VPS39Q96JC1 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.41□□□□□ -2.18
VPS39Q96JC1 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.41□□□□□ -2.18
VPS39Q96JC1 ZNF72P-201ENST00000425869 1908 ntBASIC1.4□□□□□ -2.18
VPS39Q96JC1 RNU1-62P-201ENST00000362599 164 ntBASIC1.4□□□□□ -2.19
VPS39Q96JC1 SNORD81.2-201ENST00000365153 76 ntBASIC1.4□□□□□ -2.19
VPS39Q96JC1 RNU6-1235P-201ENST00000384559 107 ntBASIC1.4□□□□□ -2.19
VPS39Q96JC1 RNA5SP213-201ENST00000391031 106 ntBASIC1.4□□□□□ -2.19
VPS39Q96JC1 MRPL35P1-201ENST00000404272 572 ntBASIC1.4□□□□□ -2.19
VPS39Q96JC1 RPL37P10-201ENST00000412884 288 ntBASIC1.4□□□□□ -2.19
VPS39Q96JC1 AL161935.2-201ENST00000414627 60 ntBASIC1.4□□□□□ -2.19
VPS39Q96JC1 RBMX2P4-201ENST00000441256 376 ntBASIC1.4□□□□□ -2.19
VPS39Q96JC1 AC107399.1-201ENST00000451226 265 ntBASIC1.4□□□□□ -2.19
VPS39Q96JC1 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.4□□□□□ -2.19
VPS39Q96JC1 RNU6-498P-201ENST00000459468 107 ntBASIC1.4□□□□□ -2.19
VPS39Q96JC1 RPL30P7-201ENST00000479312 323 ntBASIC1.4□□□□□ -2.19
VPS39Q96JC1 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.4□□□□□ -2.19
VPS39Q96JC1 SCARNA16.2-201ENST00000516520 172 ntBASIC1.4□□□□□ -2.19
VPS39Q96JC1 RNU2-34P-201ENST00000516534 121 ntBASIC1.4□□□□□ -2.19
VPS39Q96JC1 AC019176.1-201ENST00000518519 225 ntBASIC1.4□□□□□ -2.19
VPS39Q96JC1 MIR5701-3-201ENST00000578890 82 ntBASIC1.4□□□□□ -2.19
VPS39Q96JC1 MIR4769-201ENST00000584126 77 ntBASIC1.4□□□□□ -2.19
VPS39Q96JC1 MIR5701-1-201ENST00000585138 82 ntBASIC1.4□□□□□ -2.19
VPS39Q96JC1 AL645939.4-201ENST00000604495 135 ntBASIC1.4□□□□□ -2.19
VPS39Q96JC1 SNORD11B-201ENST00000607707 90 ntBASIC1.4□□□□□ -2.19
VPS39Q96JC1 MIR5701-2-201ENST00000615634 82 ntBASIC1.4□□□□□ -2.19
VPS39Q96JC1 MTND5P16-201ENST00000460269 1703 ntBASIC1.4□□□□□ -2.19
VPS39Q96JC1 SNORA4.2-201ENST00000365313 147 ntBASIC1.39□□□□□ -2.19
VPS39Q96JC1 RNU6-1283P-201ENST00000365314 105 ntBASIC1.39□□□□□ -2.19
VPS39Q96JC1 RNU6-245P-201ENST00000384020 107 ntBASIC1.39□□□□□ -2.19
VPS39Q96JC1 RNU6-281P-201ENST00000384212 103 ntBASIC1.39□□□□□ -2.19
VPS39Q96JC1 RNU6-1065P-201ENST00000384513 106 ntBASIC1.39□□□□□ -2.19
VPS39Q96JC1 MIR150-201ENST00000385048 84 ntBASIC1.39□□□□□ -2.19
VPS39Q96JC1 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.39□□□□□ -2.19
VPS39Q96JC1 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.39□□□□□ -2.19
VPS39Q96JC1 RN7SKP210-201ENST00000459176 261 ntBASIC1.39□□□□□ -2.19
VPS39Q96JC1 AC046134.1-201ENST00000514454 666 ntBASIC1.39□□□□□ -2.19
VPS39Q96JC1 AC025647.1-201ENST00000517879 253 ntBASIC1.39□□□□□ -2.19
VPS39Q96JC1 AC091144.1-201ENST00000519573 138 ntBASIC1.39□□□□□ -2.19
VPS39Q96JC1 AC134698.4-201ENST00000523451 826 ntBASIC1.39□□□□□ -2.19
VPS39Q96JC1 RAB11AP2-201ENST00000545905 639 ntBASIC1.39□□□□□ -2.19
VPS39Q96JC1 FRG2DP-202ENST00000566967 323 ntBASIC1.39□□□□□ -2.19
VPS39Q96JC1 AC015688.6-201ENST00000577737 104 ntBASIC1.39□□□□□ -2.19
VPS39Q96JC1 AC016727.1-205ENST00000605437 569 ntBASIC1.39□□□□□ -2.19
VPS39Q96JC1 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC1.39□□□□□ -2.19
VPS39Q96JC1 AC008873.1-201ENST00000625051 138 ntBASIC1.39□□□□□ -2.19
VPS39Q96JC1 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.39□□□□□ -2.19
VPS39Q96JC1 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms