Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 U6.108-201ENST00000637764 58 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 MTND5P35-201ENST00000557537 1720 ntBASIC1.22□□□□□ -2.21
RPUSD4Q96CM3 MIR302D-201ENST00000362275 68 ntBASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 Y_RNA.2-201ENST00000362330 96 ntBASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 Y_RNA.48-201ENST00000362710 103 ntBASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 RNU6-1283P-201ENST00000365314 105 ntBASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 RNU6-439P-201ENST00000384188 106 ntBASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 RNU6-1145P-201ENST00000384246 107 ntBASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 MIR329-1-201ENST00000385028 80 ntBASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 SNORA75.4-201ENST00000391278 119 ntBASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 RNU6-876P-201ENST00000391295 104 ntBASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 MTND4P18-201ENST00000447010 465 ntBASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 Y_RNA.635-201ENST00000459041 101 ntBASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 RPL36AP21-201ENST00000490372 323 ntBASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 HMGN1P13-201ENST00000505795 138 ntBASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 AC103851.1-201ENST00000506833 274 ntBASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 AC074133.1-201ENST00000515696 183 ntBASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 MIR2355-201ENST00000517199 87 ntBASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 MIR5695-201ENST00000579717 85 ntBASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 AC006001.4-201ENST00000622243 395 ntBASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 TPTEP1-208ENST00000636884 213 ntBASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.21□□□□□ -2.22
RPUSD4Q96CM3 MTND5P16-201ENST00000460269 1703 ntBASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 AC006026.1-201ENST00000444025 1803 ntBASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 RNU6-874P-201ENST00000362390 105 ntBASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 RNU6-222P-201ENST00000362438 107 ntBASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 SNORA33-201ENST00000363664 130 ntBASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 RNU6-414P-201ENST00000363705 104 ntBASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 Y_RNA.474-201ENST00000384341 102 ntBASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 MIR194-1-201ENST00000384892 85 ntBASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 U8.13-201ENST00000390842 128 ntBASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 MIR1304-201ENST00000408243 91 ntBASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 AC245517.4-201ENST00000448601 281 ntBASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 RPL7P42-201ENST00000481005 679 ntBASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 RPL17P19-201ENST00000489069 552 ntBASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 AC093023.1-201ENST00000547375 507 ntBASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 SUB1P3-201ENST00000564581 315 ntBASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 AC016925.2-201ENST00000605108 242 ntBASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 AC080078.3-201ENST00000605407 463 ntBASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 AL359075.3-201ENST00000613288 217 ntBASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 AC025253.1-201ENST00000613623 543 ntBASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
RPUSD4Q96CM3 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 RNU6-1264P-201ENST00000383891 107 ntBASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 Y_RNA.473-201ENST00000384333 102 ntBASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 RNU6-417P-201ENST00000384712 107 ntBASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 RNU1-78P-201ENST00000391248 165 ntBASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 MIR1253-201ENST00000408273 105 ntBASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 AC098614.3-201ENST00000438957 440 ntBASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 RPS27P1-201ENST00000450552 247 ntBASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 snoU13.27-201ENST00000459278 104 ntBASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 SNORA59A-201ENST00000459326 152 ntBASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 HMGN1P12-201ENST00000499125 195 ntBASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 SNORA25.15-201ENST00000516487 89 ntBASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 RN7SKP49-201ENST00000516675 260 ntBASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 RNU7-128P-201ENST00000517247 62 ntBASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 AC004584.2-201ENST00000570407 410 ntBASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 MIR4422-201ENST00000581938 83 ntBASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 MIR6845-201ENST00000613182 61 ntBASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 PISRT1.1-201ENST00000616930 107 ntBASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 U6.73-201ENST00000619194 103 ntBASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 AC092794.2-201ENST00000620933 563 ntBASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 AL669831.3-213ENST00000636676 183 ntBASIC1.19□□□□□ -2.22
RPUSD4Q96CM3 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
RPUSD4Q96CM3 RNU6-727P-201ENST00000363592 107 ntBASIC1.18□□□□□ -2.22
RPUSD4Q96CM3 RNU6-1188P-201ENST00000363795 107 ntBASIC1.18□□□□□ -2.22
RPUSD4Q96CM3 RNU6-950P-201ENST00000384651 107 ntBASIC1.18□□□□□ -2.22
RPUSD4Q96CM3 Y_RNA.557-201ENST00000384680 107 ntBASIC1.18□□□□□ -2.22
RPUSD4Q96CM3 MIR23A-201ENST00000385245 73 ntBASIC1.18□□□□□ -2.22
RPUSD4Q96CM3 SNORA75.6-201ENST00000391318 127 ntBASIC1.18□□□□□ -2.22
RPUSD4Q96CM3 AL627390.1-201ENST00000396055 340 ntBASIC1.18□□□□□ -2.22
RPUSD4Q96CM3 MIR1267-201ENST00000408723 78 ntBASIC1.18□□□□□ -2.22
RPUSD4Q96CM3 RNU2-7P-201ENST00000410794 178 ntBASIC1.18□□□□□ -2.22
RPUSD4Q96CM3 RNU4-14P-201ENST00000410858 122 ntBASIC1.18□□□□□ -2.22
RPUSD4Q96CM3 RNU6-1001P-201ENST00000411265 100 ntBASIC1.18□□□□□ -2.22
RPUSD4Q96CM3 ELOCP21-201ENST00000412558 336 ntBASIC1.18□□□□□ -2.22
RPUSD4Q96CM3 RPL30P13-201ENST00000418873 348 ntBASIC1.18□□□□□ -2.22
RPUSD4Q96CM3 AL445305.1-201ENST00000432577 575 ntBASIC1.18□□□□□ -2.22
RPUSD4Q96CM3 AC010095.1-201ENST00000443543 144 ntBASIC1.18□□□□□ -2.22
RPUSD4Q96CM3 snoU13.9-201ENST00000458927 103 ntBASIC1.18□□□□□ -2.22
RPUSD4Q96CM3 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.18□□□□□ -2.22
RPUSD4Q96CM3 RNU7-99P-201ENST00000516271 62 ntBASIC1.18□□□□□ -2.22
RPUSD4Q96CM3 SCARNA16.2-201ENST00000516520 172 ntBASIC1.18□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms