Protein–RNA interactions for Protein: P49642

PRIM1, DNA primase small subunit, humanhuman

Known RBP Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRIM1P49642 SNORD12C-201ENST00000386307 89 ntBASIC4.68□□□□□ -1.66
PRIM1P49642 SNORA26.2-201ENST00000390922 122 ntBASIC4.68□□□□□ -1.66
PRIM1P49642 HMGN2P8-201ENST00000391458 268 ntBASIC4.68□□□□□ -1.66
PRIM1P49642 RNA5SP239-201ENST00000410218 129 ntBASIC4.68□□□□□ -1.66
PRIM1P49642 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC4.68□□□□□ -1.66
PRIM1P49642 AC245102.2-201ENST00000448956 180 ntBASIC4.68□□□□□ -1.66
PRIM1P49642 U3.44-201ENST00000458938 192 ntBASIC4.68□□□□□ -1.66
PRIM1P49642 RNU6-498P-201ENST00000459468 107 ntBASIC4.68□□□□□ -1.66
PRIM1P49642 RN7SL93P-201ENST00000463035 293 ntBASIC4.68□□□□□ -1.66
PRIM1P49642 COX6CP6-201ENST00000490840 228 ntBASIC4.68□□□□□ -1.66
PRIM1P49642 RNU7-149P-201ENST00000516739 59 ntBASIC4.68□□□□□ -1.66
PRIM1P49642 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC4.68□□□□□ -1.66
PRIM1P49642 JPX_2.1-201ENST00000614161 69 ntBASIC4.68□□□□□ -1.66
PRIM1P49642 AP003122.5-201ENST00000527668 3766 ntBASIC4.68□□□□□ -1.66
PRIM1P49642 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
PRIM1P49642 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
PRIM1P49642 AC103988.1-201ENST00000566382 2177 ntBASIC4.67□□□□□ -1.66
PRIM1P49642 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC4.67□□□□□ -1.66
PRIM1P49642 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
PRIM1P49642 RNU1-18P-201ENST00000363062 164 ntBASIC4.67□□□□□ -1.66
PRIM1P49642 Y_RNA.163-201ENST00000363702 113 ntBASIC4.67□□□□□ -1.66
PRIM1P49642 Y_RNA.328-201ENST00000365208 113 ntBASIC4.67□□□□□ -1.66
PRIM1P49642 RNU6-905P-201ENST00000384434 107 ntBASIC4.67□□□□□ -1.66
PRIM1P49642 Y_RNA.544-201ENST00000384650 113 ntBASIC4.67□□□□□ -1.66
PRIM1P49642 MIR3074-201ENST00000384885 81 ntBASIC4.67□□□□□ -1.66
PRIM1P49642 RNU11-5P-201ENST00000391216 129 ntBASIC4.67□□□□□ -1.66
PRIM1P49642 RNA5SP354-201ENST00000391247 136 ntBASIC4.67□□□□□ -1.66
PRIM1P49642 EDDM3CP-201ENST00000415977 425 ntBASIC4.67□□□□□ -1.66
PRIM1P49642 HMGN2P16-201ENST00000456802 261 ntBASIC4.67□□□□□ -1.66
PRIM1P49642 AC080013.2-201ENST00000460866 323 ntBASIC4.67□□□□□ -1.66
PRIM1P49642 SNORA40.13-201ENST00000516379 120 ntBASIC4.67□□□□□ -1.66
PRIM1P49642 RNU6-63P-201ENST00000516690 95 ntBASIC4.67□□□□□ -1.66
PRIM1P49642 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC4.67□□□□□ -1.66
PRIM1P49642 AL929325.1-201ENST00000603096 117 ntBASIC4.67□□□□□ -1.66
PRIM1P49642 U4.6-201ENST00000621618 127 ntBASIC4.67□□□□□ -1.66
PRIM1P49642 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
PRIM1P49642 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC4.67□□□□□ -1.66
PRIM1P49642 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
PRIM1P49642 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.66□□□□□ -1.66
PRIM1P49642 RNU6-1240P-201ENST00000365155 104 ntBASIC4.66□□□□□ -1.66
PRIM1P49642 Y_RNA.348-201ENST00000365403 103 ntBASIC4.66□□□□□ -1.66
PRIM1P49642 SNORD14D-201ENST00000384390 87 ntBASIC4.66□□□□□ -1.66
PRIM1P49642 MIR1263-201ENST00000408324 86 ntBASIC4.66□□□□□ -1.66
PRIM1P49642 RPS3AP1-201ENST00000413190 320 ntBASIC4.66□□□□□ -1.66
PRIM1P49642 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC4.66□□□□□ -1.66
PRIM1P49642 EIF4EP4-201ENST00000424916 578 ntBASIC4.66□□□□□ -1.66
PRIM1P49642 AC018634.1-201ENST00000437554 401 ntBASIC4.66□□□□□ -1.66
PRIM1P49642 AC010099.1-201ENST00000455434 375 ntBASIC4.66□□□□□ -1.66
PRIM1P49642 PHBP14-201ENST00000512887 367 ntBASIC4.66□□□□□ -1.66
PRIM1P49642 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC4.66□□□□□ -1.66
PRIM1P49642 AP000867.2-201ENST00000532468 320 ntBASIC4.66□□□□□ -1.66
PRIM1P49642 AP001318.4-201ENST00000616637 121 ntBASIC4.66□□□□□ -1.66
PRIM1P49642 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
PRIM1P49642 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
PRIM1P49642 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC4.66□□□□□ -1.66
PRIM1P49642 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
PRIM1P49642 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
PRIM1P49642 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
PRIM1P49642 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC4.65□□□□□ -1.67
PRIM1P49642 RPS27P22-201ENST00000478056 241 ntBASIC4.65□□□□□ -1.67
PRIM1P49642 RN7SL504P-201ENST00000494496 287 ntBASIC4.65□□□□□ -1.67
PRIM1P49642 AC093663.1-201ENST00000497190 394 ntBASIC4.65□□□□□ -1.67
PRIM1P49642 RNU6-970P-201ENST00000516312 107 ntBASIC4.65□□□□□ -1.67
PRIM1P49642 AC109329.2-201ENST00000519658 482 ntBASIC4.65□□□□□ -1.67
PRIM1P49642 LINC02471-203ENST00000641941 4752 ntBASIC4.65□□□□□ -1.67
PRIM1P49642 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
PRIM1P49642 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
PRIM1P49642 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
PRIM1P49642 RNA5SP374-201ENST00000362939 125 ntBASIC4.64□□□□□ -1.67
PRIM1P49642 RNU6-1209P-201ENST00000363655 107 ntBASIC4.64□□□□□ -1.67
PRIM1P49642 Y_RNA.796-201ENST00000364268 102 ntBASIC4.64□□□□□ -1.67
PRIM1P49642 Y_RNA.799-201ENST00000364992 102 ntBASIC4.64□□□□□ -1.67
PRIM1P49642 RNU6-234P-201ENST00000365229 104 ntBASIC4.64□□□□□ -1.67
PRIM1P49642 SNORA51.5-201ENST00000384126 131 ntBASIC4.64□□□□□ -1.67
PRIM1P49642 Y_RNA.500-201ENST00000384466 111 ntBASIC4.64□□□□□ -1.67
PRIM1P49642 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC4.64□□□□□ -1.67
PRIM1P49642 RPL30P4-201ENST00000429309 333 ntBASIC4.64□□□□□ -1.67
PRIM1P49642 AC027419.1-201ENST00000522976 328 ntBASIC4.64□□□□□ -1.67
PRIM1P49642 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC4.64□□□□□ -1.67
PRIM1P49642 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.64□□□□□ -1.67
PRIM1P49642 MIR4513-201ENST00000581077 86 ntBASIC4.64□□□□□ -1.67
PRIM1P49642 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC4.64□□□□□ -1.67
PRIM1P49642 AC009831.4-201ENST00000620744 325 ntBASIC4.64□□□□□ -1.67
PRIM1P49642 IPO8P1-201ENST00000455509 3109 ntBASIC4.64□□□□□ -1.67
PRIM1P49642 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
PRIM1P49642 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
PRIM1P49642 AC007064.1-201ENST00000412238 351 ntBASIC4.63□□□□□ -1.67
PRIM1P49642 RNA5SP281-201ENST00000516504 135 ntBASIC4.63□□□□□ -1.67
PRIM1P49642 IGKV2-26-201ENST00000518305 343 ntBASIC4.63□□□□□ -1.67
PRIM1P49642 EIF4BP1-201ENST00000554881 351 ntBASIC4.63□□□□□ -1.67
PRIM1P49642 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.63□□□□□ -1.67
PRIM1P49642 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
PRIM1P49642 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
PRIM1P49642 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC4.63□□□□□ -1.67
PRIM1P49642 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
PRIM1P49642 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.63□□□□□ -1.67
PRIM1P49642 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC4.62□□□□□ -1.67
PRIM1P49642 AL589743.1-201ENST00000551932 2712 ntBASIC4.62□□□□□ -1.67
PRIM1P49642 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
PRIM1P49642 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms