Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
TNFRSF4P43489 RNU6-60P-201ENST00000364792 103 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 RNU6-17P-201ENST00000384245 107 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 SNORA51.11-201ENST00000384442 131 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 RNU6-18P-201ENST00000384527 107 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 SNORA75.6-201ENST00000391318 127 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 AC022028.1-201ENST00000412054 408 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 AC007098.1-201ENST00000420122 367 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 MTCYBP10-201ENST00000424905 650 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 MTND3P23-201ENST00000431980 347 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.64□□□□□ -2.15
TNFRSF4P43489 AC009237.7-201ENST00000447357 229 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 ATP5J2P3-201ENST00000451550 258 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 MTCO3P8-201ENST00000453691 755 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 RNU7-95P-201ENST00000459222 64 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 AC007215.1-201ENST00000464893 276 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 AC114982.1-201ENST00000469402 321 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 RPL17P19-201ENST00000489069 552 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 AC022493.2-201ENST00000506122 481 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.64□□□□□ -2.15
TNFRSF4P43489 TRMT112P2-201ENST00000512910 132 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 RNU6-120P-201ENST00000516077 103 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 Y_RNA.673-201ENST00000516306 88 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 RNA5SP54-201ENST00000516951 92 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 SNORA44.1-201ENST00000517031 108 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 Y_RNA.718-201ENST00000517110 102 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 RNU6-58P-201ENST00000517143 103 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 RAB11AP2-201ENST00000545905 639 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 AC027288.2-201ENST00000553028 243 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 UBL5P4-201ENST00000562584 236 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.64□□□□□ -2.15
TNFRSF4P43489 SUB1P4-201ENST00000566062 339 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.64□□□□□ -2.15
TNFRSF4P43489 AC010900.2-201ENST00000604508 210 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 AC103810.8-201ENST00000607347 118 ntBASIC1.64□□□□□ -2.15
TNFRSF4P43489 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.64□□□□□ -2.15
TNFRSF4P43489 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
TNFRSF4P43489 RNU6-222P-201ENST00000362438 107 ntBASIC1.63□□□□□ -2.15
TNFRSF4P43489 RNU6-873P-201ENST00000363833 107 ntBASIC1.63□□□□□ -2.15
TNFRSF4P43489 Y_RNA.226-201ENST00000364337 114 ntBASIC1.63□□□□□ -2.15
TNFRSF4P43489 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
TNFRSF4P43489 USP9YP16-201ENST00000430287 407 ntBASIC1.63□□□□□ -2.15
TNFRSF4P43489 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.63□□□□□ -2.15
TNFRSF4P43489 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.63□□□□□ -2.15
TNFRSF4P43489 USP9YP23-201ENST00000455085 407 ntBASIC1.63□□□□□ -2.15
TNFRSF4P43489 AC112492.4-201ENST00000456549 352 ntBASIC1.63□□□□□ -2.15
TNFRSF4P43489 SNORD19B-201ENST00000459623 84 ntBASIC1.63□□□□□ -2.15
TNFRSF4P43489 AP000870.1-201ENST00000472927 406 ntBASIC1.63□□□□□ -2.15
TNFRSF4P43489 HMGB3P17-201ENST00000504195 649 ntBASIC1.63□□□□□ -2.15
TNFRSF4P43489 SNORA25.14-201ENST00000516481 132 ntBASIC1.63□□□□□ -2.15
TNFRSF4P43489 RNU2-34P-201ENST00000516534 121 ntBASIC1.63□□□□□ -2.15
TNFRSF4P43489 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
TNFRSF4P43489 LARP7P1-201ENST00000605576 316 ntBASIC1.63□□□□□ -2.15
TNFRSF4P43489 AC126177.8-201ENST00000618339 1015 ntBASIC1.63□□□□□ -2.15
TNFRSF4P43489 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.62□□□□□ -2.15
TNFRSF4P43489 Y_RNA.106-201ENST00000363189 100 ntBASIC1.62□□□□□ -2.15
TNFRSF4P43489 RNU1-42P-201ENST00000364033 160 ntBASIC1.62□□□□□ -2.15
TNFRSF4P43489 RNU6-99P-201ENST00000364721 107 ntBASIC1.62□□□□□ -2.15
TNFRSF4P43489 RNU6-418P-201ENST00000384035 107 ntBASIC1.62□□□□□ -2.15
TNFRSF4P43489 MIR517C-201ENST00000385103 95 ntBASIC1.62□□□□□ -2.15
TNFRSF4P43489 AC074290.1-201ENST00000448883 135 ntBASIC1.62□□□□□ -2.15
TNFRSF4P43489 MIR2053-201ENST00000459295 91 ntBASIC1.62□□□□□ -2.15
TNFRSF4P43489 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.62□□□□□ -2.15
TNFRSF4P43489 AC067942.3-201ENST00000512025 362 ntBASIC1.62□□□□□ -2.15
TNFRSF4P43489 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.62□□□□□ -2.15
TNFRSF4P43489 RNU1-117P-201ENST00000517041 158 ntBASIC1.62□□□□□ -2.15
TNFRSF4P43489 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.62□□□□□ -2.15
TNFRSF4P43489 RRN3P3-201ENST00000549207 578 ntBASIC1.62□□□□□ -2.15
TNFRSF4P43489 MIR5701-3-201ENST00000578890 82 ntBASIC1.62□□□□□ -2.15
TNFRSF4P43489 MIR5695-201ENST00000579717 85 ntBASIC1.62□□□□□ -2.15
TNFRSF4P43489 MIR5701-1-201ENST00000585138 82 ntBASIC1.62□□□□□ -2.15
TNFRSF4P43489 AC069114.2-201ENST00000604699 304 ntBASIC1.62□□□□□ -2.15
TNFRSF4P43489 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.62□□□□□ -2.15
TNFRSF4P43489 MIR1244-1-201ENST00000612829 85 ntBASIC1.62□□□□□ -2.15
TNFRSF4P43489 MIR5701-2-201ENST00000615634 82 ntBASIC1.62□□□□□ -2.15
TNFRSF4P43489 MIR1244-3-201ENST00000635744 85 ntBASIC1.62□□□□□ -2.15
TNFRSF4P43489 MIR1244-2-201ENST00000636449 85 ntBASIC1.62□□□□□ -2.15
TNFRSF4P43489 MIR1244-4-202ENST00000636813 85 ntBASIC1.62□□□□□ -2.15
TNFRSF4P43489 BX322639.1-202ENST00000423987 2213 ntBASIC1.62□□□□□ -2.15
TNFRSF4P43489 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.61□□□□□ -2.15
TNFRSF4P43489 RNU6-280P-201ENST00000364145 104 ntBASIC1.61□□□□□ -2.15
TNFRSF4P43489 SNORD48-201ENST00000364953 64 ntBASIC1.61□□□□□ -2.15
TNFRSF4P43489 SNORA67.6-201ENST00000391093 99 ntBASIC1.61□□□□□ -2.15
TNFRSF4P43489 MIR190B-201ENST00000401119 79 ntBASIC1.61□□□□□ -2.15
TNFRSF4P43489 RN7SKP101-201ENST00000411376 320 ntBASIC1.61□□□□□ -2.15
TNFRSF4P43489 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.61□□□□□ -2.15
TNFRSF4P43489 ELOCP24-201ENST00000456370 334 ntBASIC1.61□□□□□ -2.15
TNFRSF4P43489 AC010409.1-201ENST00000487382 476 ntBASIC1.61□□□□□ -2.15
TNFRSF4P43489 AC005840.1-201ENST00000498412 377 ntBASIC1.61□□□□□ -2.15
TNFRSF4P43489 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
TNFRSF4P43489 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.61□□□□□ -2.15
TNFRSF4P43489 RNU6-948P-201ENST00000516374 107 ntBASIC1.61□□□□□ -2.15
TNFRSF4P43489 SNORA31.17-201ENST00000516953 127 ntBASIC1.61□□□□□ -2.15
TNFRSF4P43489 RNU6-856P-201ENST00000516959 98 ntBASIC1.61□□□□□ -2.15
TNFRSF4P43489 AC024614.2-201ENST00000577584 372 ntBASIC1.61□□□□□ -2.15
TNFRSF4P43489 MIR3198-2-201ENST00000577868 80 ntBASIC1.61□□□□□ -2.15
TNFRSF4P43489 AL117336.2-201ENST00000602435 335 ntBASIC1.61□□□□□ -2.15
TNFRSF4P43489 AL645939.4-201ENST00000604495 135 ntBASIC1.61□□□□□ -2.15
TNFRSF4P43489 MTND5P16-201ENST00000460269 1703 ntBASIC1.6□□□□□ -2.15
TNFRSF4P43489 RNU6-874P-201ENST00000362390 105 ntBASIC1.6□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 168.3 ms