Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC-0.83□□□□□ -2.54
CUX1P39880 AC107297.1-201ENST00000459991 176 ntBASIC-0.83□□□□□ -2.54
CUX1P39880 RPL39P34-201ENST00000477141 156 ntBASIC-0.83□□□□□ -2.54
CUX1P39880 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC-0.83□□□□□ -2.54
CUX1P39880 AC119751.4-201ENST00000507498 357 ntBASIC-0.83□□□□□ -2.54
CUX1P39880 RNU7-28P-201ENST00000516759 62 ntBASIC-0.83□□□□□ -2.54
CUX1P39880 RNU6-677P-201ENST00000516914 101 ntBASIC-0.83□□□□□ -2.54
CUX1P39880 LRRC34P1-201ENST00000542742 915 ntBASIC-0.83□□□□□ -2.54
CUX1P39880 MIR4263-201ENST00000584745 83 ntBASIC-0.83□□□□□ -2.54
CUX1P39880 AL158042.1-201ENST00000605338 460 ntBASIC-0.83□□□□□ -2.54
CUX1P39880 AC026585.1-201ENST00000619582 524 ntBASIC-0.83□□□□□ -2.54
CUX1P39880 AL162726.3-218ENST00000636401 95 ntBASIC-0.83□□□□□ -2.54
CUX1P39880 SNORA72.1-201ENST00000363485 129 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 SNORA25.7-201ENST00000364375 127 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 RNU6-1240P-201ENST00000365155 104 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 RNU6-580P-201ENST00000365159 107 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 Y_RNA.416-201ENST00000384014 113 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 RNU6-10P-201ENST00000384036 107 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 RNU6-15P-201ENST00000384534 107 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 MIR760-201ENST00000390220 80 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 AL049545.1-201ENST00000401856 572 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC-0.84□□□□□ -2.54
CUX1P39880 AHI1-208ENST00000488690 712 ntTSL 5 BASIC-0.84□□□□□ -2.54
CUX1P39880 AC016632.1-201ENST00000503994 196 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC-0.84□□□□□ -2.54
CUX1P39880 AC090897.1-201ENST00000580909 226 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 NEAT1_2.1-201ENST00000620525 105 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 RNU6-1097P-201ENST00000363586 107 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 Y_RNA.168-201ENST00000363740 102 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 Y_RNA.265-201ENST00000364677 108 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 RNA5SP117-201ENST00000365294 118 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 Y_RNA.567-201ENST00000384736 106 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 RNU6-1186P-201ENST00000410429 97 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 RNU6-293P-201ENST00000411259 106 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 USP9YP11-201ENST00000427537 717 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 AC023632.1-201ENST00000518463 375 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC-0.84□□□□□ -2.54
CUX1P39880 EIF1AXP2-201ENST00000555940 413 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 MIR378F-201ENST00000578143 78 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 AC068790.2-201ENST00000602601 557 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 AC009994.1-201ENST00000606889 253 ntBASIC-0.84□□□□□ -2.54
CUX1P39880 RNU6-161P-201ENST00000363051 106 ntBASIC-0.85□□□□□ -2.55
CUX1P39880 RNU5E-7P-201ENST00000365290 117 ntBASIC-0.85□□□□□ -2.55
CUX1P39880 Y_RNA.336-201ENST00000365307 109 ntBASIC-0.85□□□□□ -2.55
CUX1P39880 MIR526A1-201ENST00000384897 85 ntBASIC-0.85□□□□□ -2.55
CUX1P39880 MIR1302-7-201ENST00000408841 72 ntBASIC-0.85□□□□□ -2.55
CUX1P39880 MTCO2P23-201ENST00000425216 680 ntBASIC-0.85□□□□□ -2.55
CUX1P39880 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC-0.85□□□□□ -2.55
CUX1P39880 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC-0.85□□□□□ -2.55
CUX1P39880 RNU7-41P-201ENST00000515917 61 ntBASIC-0.85□□□□□ -2.55
CUX1P39880 AC100830.2-201ENST00000581636 240 ntBASIC-0.85□□□□□ -2.55
CUX1P39880 AL136221.1-201ENST00000621449 509 ntBASIC-0.85□□□□□ -2.55
CUX1P39880 U4.7-201ENST00000638126 106 ntBASIC-0.85□□□□□ -2.55
CUX1P39880 MIR549A-201ENST00000385268 96 ntBASIC-0.86□□□□□ -2.55
CUX1P39880 MIR196A1-201ENST00000388006 70 ntBASIC-0.86□□□□□ -2.55
CUX1P39880 MIR548L-201ENST00000408303 86 ntBASIC-0.86□□□□□ -2.55
CUX1P39880 USP9YP29-201ENST00000445112 563 ntBASIC-0.86□□□□□ -2.55
CUX1P39880 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC-0.86□□□□□ -2.55
CUX1P39880 HGF-207ENST00000453018 721 ntTSL 3 BASIC-0.86□□□□□ -2.55
CUX1P39880 AL049829.1-201ENST00000465411 156 ntBASIC-0.86□□□□□ -2.55
CUX1P39880 AC079395.1-201ENST00000510981 262 ntBASIC-0.86□□□□□ -2.55
CUX1P39880 SLC2A13P1-201ENST00000531560 322 ntBASIC-0.86□□□□□ -2.55
CUX1P39880 MIR4432-201ENST00000581823 84 ntBASIC-0.86□□□□□ -2.55
CUX1P39880 Z99497.2-201ENST00000603634 310 ntBASIC-0.86□□□□□ -2.55
CUX1P39880 AC246785.4-201ENST00000605374 287 ntBASIC-0.86□□□□□ -2.55
CUX1P39880 Z99289.3-201ENST00000605586 594 ntBASIC-0.86□□□□□ -2.55
CUX1P39880 RNU6-1179P-201ENST00000384667 107 ntBASIC-0.87□□□□□ -2.55
CUX1P39880 SNORA26-201ENST00000391286 122 ntBASIC-0.87□□□□□ -2.55
CUX1P39880 MIR891A-201ENST00000401237 79 ntBASIC-0.87□□□□□ -2.55
CUX1P39880 RNU6-613P-201ENST00000410412 108 ntBASIC-0.87□□□□□ -2.55
CUX1P39880 ELOCP21-201ENST00000412558 336 ntBASIC-0.87□□□□□ -2.55
CUX1P39880 AC133104.1-201ENST00000429100 218 ntBASIC-0.87□□□□□ -2.55
CUX1P39880 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC-0.87□□□□□ -2.55
CUX1P39880 RNU7-57P-201ENST00000459540 60 ntBASIC-0.87□□□□□ -2.55
CUX1P39880 MTCO3P27-201ENST00000514397 196 ntBASIC-0.87□□□□□ -2.55
CUX1P39880 RNU6-1232P-201ENST00000516299 86 ntBASIC-0.87□□□□□ -2.55
CUX1P39880 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC-0.87□□□□□ -2.55
CUX1P39880 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC-0.87□□□□□ -2.55
CUX1P39880 AC010999.1-201ENST00000611856 324 ntBASIC-0.87□□□□□ -2.55
CUX1P39880 U6.73-201ENST00000619194 103 ntBASIC-0.87□□□□□ -2.55
CUX1P39880 AC099654.8-201ENST00000637757 681 ntBASIC-0.87□□□□□ -2.55
CUX1P39880 RNY1P7-201ENST00000384743 110 ntBASIC-0.88□□□□□ -2.55
CUX1P39880 RNU2-3P-201ENST00000410144 191 ntBASIC-0.88□□□□□ -2.55
CUX1P39880 USP9YP25-201ENST00000457708 443 ntBASIC-0.88□□□□□ -2.55
CUX1P39880 NAMPTP3-201ENST00000569273 224 ntBASIC-0.88□□□□□ -2.55
CUX1P39880 FRG1KP-201ENST00000623592 341 ntBASIC-0.88□□□□□ -2.55
CUX1P39880 MPP6-209ENST00000625307 126 ntTSL 5 BASIC-0.88□□□□□ -2.55
CUX1P39880 MIRLET7C-201ENST00000362160 84 ntBASIC-0.89□□□□□ -2.55
CUX1P39880 MLLT10P1-201ENST00000418346 262 ntBASIC-0.89□□□□□ -2.55
CUX1P39880 AL133396.1-201ENST00000432048 687 ntBASIC-0.89□□□□□ -2.55
CUX1P39880 AC013470.1-201ENST00000453438 462 ntBASIC-0.89□□□□□ -2.55
CUX1P39880 AC026414.1-201ENST00000504046 698 ntBASIC-0.89□□□□□ -2.55
CUX1P39880 AC025647.1-201ENST00000517879 253 ntBASIC-0.89□□□□□ -2.55
CUX1P39880 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC-0.89□□□□□ -2.55
CUX1P39880 DEFB130C-202ENST00000530001 230 ntBASIC-0.89□□□□□ -2.55
CUX1P39880 AP002453.2-201ENST00000533503 320 ntBASIC-0.89□□□□□ -2.55
CUX1P39880 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC-0.89□□□□□ -2.55
CUX1P39880 MIR6738-201ENST00000619620 64 ntBASIC-0.89□□□□□ -2.55
CUX1P39880 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC-0.89□□□□□ -2.55
CUX1P39880 U3.4-201ENST00000363352 213 ntBASIC-0.89□□□□□ -2.55
Retrieved 100 of 98,524 protein–RNA pairs in 127.7 ms