Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC006001.4-201ENST00000622243 395 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 AL078596.1-201ENST00000624856 447 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
COL18A1P39060 RNU1-36P-201ENST00000365130 165 ntBASIC0.64□□□□□ -2.31
COL18A1P39060 SNORA67.2-201ENST00000384300 149 ntBASIC0.64□□□□□ -2.31
COL18A1P39060 RNU6-440P-201ENST00000390882 105 ntBASIC0.64□□□□□ -2.31
COL18A1P39060 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC0.64□□□□□ -2.31
COL18A1P39060 DYNLT3P2-201ENST00000442517 295 ntBASIC0.64□□□□□ -2.31
COL18A1P39060 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.64□□□□□ -2.31
COL18A1P39060 TRBVA-201ENST00000498804 316 ntBASIC0.64□□□□□ -2.31
COL18A1P39060 HMGB1P29-201ENST00000505659 499 ntBASIC0.64□□□□□ -2.31
COL18A1P39060 AC025647.1-201ENST00000517879 253 ntBASIC0.64□□□□□ -2.31
COL18A1P39060 AC060788.1-201ENST00000521318 469 ntBASIC0.64□□□□□ -2.31
COL18A1P39060 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
COL18A1P39060 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC0.64□□□□□ -2.31
COL18A1P39060 AC004584.2-201ENST00000570407 410 ntBASIC0.64□□□□□ -2.31
COL18A1P39060 AC146944.4-201ENST00000602697 718 ntBASIC0.64□□□□□ -2.31
COL18A1P39060 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.64□□□□□ -2.31
COL18A1P39060 Z94722.1-201ENST00000604328 474 ntBASIC0.64□□□□□ -2.31
COL18A1P39060 AC103705.1-201ENST00000619013 241 ntBASIC0.64□□□□□ -2.31
COL18A1P39060 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.64□□□□□ -2.31
COL18A1P39060 AL391262.2-201ENST00000622466 494 ntBASIC0.64□□□□□ -2.31
COL18A1P39060 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
COL18A1P39060 Y_RNA.123-201ENST00000363338 102 ntBASIC0.63□□□□□ -2.31
COL18A1P39060 RNU6-784P-201ENST00000384330 106 ntBASIC0.63□□□□□ -2.31
COL18A1P39060 RNA5SP109-201ENST00000391010 116 ntBASIC0.63□□□□□ -2.31
COL18A1P39060 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC0.63□□□□□ -2.31
COL18A1P39060 AL358934.1-201ENST00000432346 324 ntBASIC0.63□□□□□ -2.31
COL18A1P39060 AC073415.1-201ENST00000449240 153 ntBASIC0.63□□□□□ -2.31
COL18A1P39060 HMGN1P10-201ENST00000474557 553 ntBASIC0.63□□□□□ -2.31
COL18A1P39060 RPL23AP75-201ENST00000491601 451 ntBASIC0.63□□□□□ -2.31
COL18A1P39060 AC091885.1-201ENST00000506658 268 ntBASIC0.63□□□□□ -2.31
COL18A1P39060 MIR8054-201ENST00000620877 86 ntBASIC0.63□□□□□ -2.31
COL18A1P39060 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
COL18A1P39060 RNU4-66P-201ENST00000365199 138 ntBASIC0.62□□□□□ -2.31
COL18A1P39060 RNU6-245P-201ENST00000384020 107 ntBASIC0.62□□□□□ -2.31
COL18A1P39060 AL049545.1-201ENST00000401856 572 ntBASIC0.62□□□□□ -2.31
COL18A1P39060 AL356776.1-201ENST00000406574 447 ntBASIC0.62□□□□□ -2.31
COL18A1P39060 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC0.62□□□□□ -2.31
COL18A1P39060 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC0.62□□□□□ -2.31
COL18A1P39060 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.62□□□□□ -2.31
COL18A1P39060 SNORA62.5-201ENST00000516634 120 ntBASIC0.62□□□□□ -2.31
COL18A1P39060 MIR4424-201ENST00000585257 86 ntBASIC0.62□□□□□ -2.31
COL18A1P39060 AC004492.1-201ENST00000607036 742 ntBASIC0.62□□□□□ -2.31
COL18A1P39060 AL357078.3-201ENST00000607528 618 ntBASIC0.62□□□□□ -2.31
COL18A1P39060 GHRLOS.1-201ENST00000610995 70 ntBASIC0.62□□□□□ -2.31
COL18A1P39060 RMST_3.1-201ENST00000611651 109 ntBASIC0.62□□□□□ -2.31
COL18A1P39060 AC068647.2-201ENST00000637380 353 ntBASIC0.62□□□□□ -2.31
COL18A1P39060 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.62□□□□□ -2.31
COL18A1P39060 RNU6-933P-201ENST00000384424 107 ntBASIC0.62□□□□□ -2.31
COL18A1P39060 RNY3P9-201ENST00000384727 106 ntBASIC0.62□□□□□ -2.31
COL18A1P39060 MIR19B1-201ENST00000384829 87 ntBASIC0.62□□□□□ -2.31
COL18A1P39060 AL034345.1-201ENST00000407768 123 ntBASIC0.62□□□□□ -2.31
COL18A1P39060 RAB28P5-201ENST00000427490 651 ntBASIC0.62□□□□□ -2.31
COL18A1P39060 MTND3P7-201ENST00000474435 343 ntBASIC0.62□□□□□ -2.31
COL18A1P39060 RNU4ATAC8P-201ENST00000516196 109 ntBASIC0.62□□□□□ -2.31
COL18A1P39060 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
COL18A1P39060 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.62□□□□□ -2.31
COL18A1P39060 CPDP1-201ENST00000579660 283 ntBASIC0.62□□□□□ -2.31
COL18A1P39060 MIR5583-1-201ENST00000580941 59 ntBASIC0.62□□□□□ -2.31
COL18A1P39060 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.62□□□□□ -2.31
COL18A1P39060 ZNF204P-201ENST00000416749 2397 ntBASIC0.62□□□□□ -2.31
COL18A1P39060 RNU6-1158P-201ENST00000391167 107 ntBASIC0.61□□□□□ -2.31
COL18A1P39060 MTND2P9-201ENST00000422293 931 ntBASIC0.61□□□□□ -2.31
COL18A1P39060 AC073464.1-201ENST00000429823 534 ntBASIC0.61□□□□□ -2.31
COL18A1P39060 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.61□□□□□ -2.31
COL18A1P39060 NDUFB4P10-201ENST00000452541 359 ntBASIC0.61□□□□□ -2.31
COL18A1P39060 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC0.61□□□□□ -2.31
COL18A1P39060 SCARNA16.2-201ENST00000516520 172 ntBASIC0.61□□□□□ -2.31
COL18A1P39060 RNU6-430P-201ENST00000517078 107 ntBASIC0.61□□□□□ -2.31
COL18A1P39060 RNU6-165P-201ENST00000517170 99 ntBASIC0.61□□□□□ -2.31
COL18A1P39060 AC104576.1-201ENST00000524225 88 ntBASIC0.61□□□□□ -2.31
COL18A1P39060 AC004817.2-201ENST00000561794 651 ntBASIC0.61□□□□□ -2.31
COL18A1P39060 MIR4514-201ENST00000581410 57 ntBASIC0.61□□□□□ -2.31
COL18A1P39060 AC068790.6-201ENST00000602558 258 ntBASIC0.61□□□□□ -2.31
COL18A1P39060 AC087752.4-201ENST00000605911 462 ntBASIC0.61□□□□□ -2.31
COL18A1P39060 AC097065.2-201ENST00000608159 533 ntBASIC0.61□□□□□ -2.31
COL18A1P39060 AL021879.1-201ENST00000611756 288 ntBASIC0.61□□□□□ -2.31
COL18A1P39060 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC0.6□□□□□ -2.31
COL18A1P39060 MRPL42P3-201ENST00000401492 326 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 RNU6-1186P-201ENST00000410429 97 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 AC004866.1-201ENST00000411748 78 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 AL359672.1-201ENST00000442302 409 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 AL353572.1-201ENST00000442490 417 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 SRRM1P2-201ENST00000464531 1192 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 BET1P1-201ENST00000482276 359 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 RNU7-99P-201ENST00000516271 62 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 SNORA31.10-201ENST00000516482 106 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.6□□□□□ -2.31
COL18A1P39060 MIR5589-201ENST00000579442 60 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 AC007684.1-201ENST00000609671 477 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 AL513423.1-201ENST00000621695 132 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 Z69908.1-201ENST00000622603 247 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 FER-210ENST00000628534 558 ntTSL 5 BASIC0.6□□□□□ -2.31
COL18A1P39060 U6.108-201ENST00000637764 58 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 SNORA33-201ENST00000363664 130 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 SNORD114-24-201ENST00000365029 72 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 RNU6-910P-201ENST00000390844 107 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 MIR1185-2-201ENST00000408687 86 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 AL031667.1-201ENST00000440222 725 ntBASIC0.6□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms