Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 RNA5SP445-201ENST00000515889 115 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 Y_RNA.670-201ENST00000516255 105 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 RNU7-30P-201ENST00000516835 62 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 RNU1-54P-201ENST00000517181 120 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 CBX3P8-201ENST00000532412 525 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.29□□□□□ -2.2
HOXA9P31269 AC008269.2-201ENST00000561915 1105 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 SUB1P4-201ENST00000566062 339 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 MIR4273-201ENST00000582824 84 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 AC005786.1-201ENST00000588553 154 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 SNRPGP20-201ENST00000604477 205 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 AC018462.2-201ENST00000605375 395 ntBASIC1.29□□□□□ -2.2
HOXA9P31269 AL159152.1-201ENST00000635019 2587 ntBASIC1.28□□□□□ -2.2
HOXA9P31269 RNU6-845P-201ENST00000362578 103 ntBASIC1.28□□□□□ -2.2
HOXA9P31269 Y_RNA.132-201ENST00000363421 102 ntBASIC1.28□□□□□ -2.2
HOXA9P31269 Y_RNA.160-201ENST00000363677 92 ntBASIC1.28□□□□□ -2.2
HOXA9P31269 RNU1-93P-201ENST00000364704 169 ntBASIC1.28□□□□□ -2.2
HOXA9P31269 SNORD26-201ENST00000384147 75 ntBASIC1.28□□□□□ -2.2
HOXA9P31269 RNU6-939P-201ENST00000384634 107 ntBASIC1.28□□□□□ -2.2
HOXA9P31269 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
HOXA9P31269 MIR300-201ENST00000401138 83 ntBASIC1.28□□□□□ -2.2
HOXA9P31269 AC074085.1-201ENST00000413598 418 ntBASIC1.28□□□□□ -2.2
HOXA9P31269 PDCL2P1-201ENST00000419302 352 ntBASIC1.28□□□□□ -2.2
HOXA9P31269 AL139396.1-201ENST00000421137 167 ntBASIC1.28□□□□□ -2.2
HOXA9P31269 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
HOXA9P31269 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.28□□□□□ -2.2
HOXA9P31269 MTCO3P29-201ENST00000432119 779 ntBASIC1.28□□□□□ -2.2
HOXA9P31269 RPS3AP52-201ENST00000435639 297 ntBASIC1.28□□□□□ -2.2
HOXA9P31269 RBMX2P4-201ENST00000441256 376 ntBASIC1.28□□□□□ -2.2
HOXA9P31269 HMGN2P9-201ENST00000476875 229 ntBASIC1.28□□□□□ -2.2
HOXA9P31269 AC010409.1-201ENST00000487382 476 ntBASIC1.28□□□□□ -2.2
HOXA9P31269 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.28□□□□□ -2.2
HOXA9P31269 AC097473.1-201ENST00000508142 408 ntBASIC1.28□□□□□ -2.2
HOXA9P31269 AC046134.1-201ENST00000514454 666 ntBASIC1.28□□□□□ -2.2
HOXA9P31269 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.28□□□□□ -2.2
HOXA9P31269 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.28□□□□□ -2.2
HOXA9P31269 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
HOXA9P31269 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.27□□□□□ -2.21
HOXA9P31269 ZNF299P-201ENST00000406845 1804 ntBASIC1.27□□□□□ -2.21
HOXA9P31269 MIR96-201ENST00000362288 78 ntBASIC1.27□□□□□ -2.21
HOXA9P31269 Y_RNA.390-201ENST00000383932 102 ntBASIC1.27□□□□□ -2.21
HOXA9P31269 Y_RNA.405-201ENST00000383979 100 ntBASIC1.27□□□□□ -2.21
HOXA9P31269 RNU6-767P-201ENST00000384132 107 ntBASIC1.27□□□□□ -2.21
HOXA9P31269 Y_RNA.451-201ENST00000384200 100 ntBASIC1.27□□□□□ -2.21
HOXA9P31269 RNU6-975P-201ENST00000384296 105 ntBASIC1.27□□□□□ -2.21
HOXA9P31269 Y_RNA.524-201ENST00000384564 100 ntBASIC1.27□□□□□ -2.21
HOXA9P31269 Y_RNA.561-201ENST00000384694 100 ntBASIC1.27□□□□□ -2.21
HOXA9P31269 MIR153-2-201ENST00000385225 87 ntBASIC1.27□□□□□ -2.21
HOXA9P31269 RNU6-159P-201ENST00000391080 106 ntBASIC1.27□□□□□ -2.21
HOXA9P31269 AL117342.1-201ENST00000404861 406 ntBASIC1.27□□□□□ -2.21
HOXA9P31269 Y_RNA.594-201ENST00000410373 140 ntBASIC1.27□□□□□ -2.21
HOXA9P31269 RNU4-14P-201ENST00000410858 122 ntBASIC1.27□□□□□ -2.21
HOXA9P31269 COX6CP14-201ENST00000469580 174 ntBASIC1.27□□□□□ -2.21
HOXA9P31269 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.27□□□□□ -2.21
HOXA9P31269 RNA5SP54-201ENST00000516951 92 ntBASIC1.27□□□□□ -2.21
HOXA9P31269 RNU6-856P-201ENST00000516959 98 ntBASIC1.27□□□□□ -2.21
HOXA9P31269 AK6P2-201ENST00000549020 471 ntBASIC1.27□□□□□ -2.21
HOXA9P31269 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.27□□□□□ -2.21
HOXA9P31269 UBL5P4-201ENST00000562584 236 ntBASIC1.27□□□□□ -2.21
HOXA9P31269 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.27□□□□□ -2.21
HOXA9P31269 AC080078.3-201ENST00000605407 463 ntBASIC1.27□□□□□ -2.21
HOXA9P31269 AC083806.3-201ENST00000614016 455 ntBASIC1.27□□□□□ -2.21
HOXA9P31269 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.27□□□□□ -2.21
HOXA9P31269 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
HOXA9P31269 MTND4P12-201ENST00000498999 1377 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 RNU6-862P-201ENST00000362804 105 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 Y_RNA.88-201ENST00000363029 99 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 RNU6-873P-201ENST00000363833 107 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 RNU6-1305P-201ENST00000364353 104 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 Y_RNA.319-201ENST00000365138 92 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 RNU6-1283P-201ENST00000365314 105 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 Y_RNA.404-201ENST00000383978 102 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 MIR586-201ENST00000385035 97 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 RNU6-876P-201ENST00000391295 104 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 RNU6-1050P-201ENST00000410388 107 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 AC099513.1-201ENST00000490423 301 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 RNU6-1041P-201ENST00000516254 102 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 SNORA25.14-201ENST00000516481 132 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 RNA5SP384-201ENST00000516615 116 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 RNU6-344P-201ENST00000516635 111 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 RNU6-1016P-201ENST00000516689 94 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC1.26□□□□□ -2.21
HOXA9P31269 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.26□□□□□ -2.21
HOXA9P31269 MIR5094-201ENST00000578766 85 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 MIR5701-3-201ENST00000578890 82 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.26□□□□□ -2.21
HOXA9P31269 MIR4753-201ENST00000585119 83 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 MIR5701-1-201ENST00000585138 82 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 AL355802.3-201ENST00000607571 545 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 AC005014.2-201ENST00000607795 599 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.26□□□□□ -2.21
HOXA9P31269 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 MIR5701-2-201ENST00000615634 82 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.26□□□□□ -2.21
HOXA9P31269 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
HOXA9P31269 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.25□□□□□ -2.21
HOXA9P31269 AC245060.5-201ENST00000610778 3293 ntBASIC1.25□□□□□ -2.21
HOXA9P31269 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
HOXA9P31269 RNU6-112P-201ENST00000363599 104 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms