Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 AC145146.1-201ENST00000496370 254 ntBASIC2.49□□□□□ -2.01
HOXD9P28356 SNORA27.4-201ENST00000516650 95 ntBASIC2.49□□□□□ -2.01
HOXD9P28356 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.49□□□□□ -2.01
HOXD9P28356 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.49□□□□□ -2.01
HOXD9P28356 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.49□□□□□ -2.01
HOXD9P28356 SNORD53-201ENST00000579969 78 ntBASIC2.49□□□□□ -2.01
HOXD9P28356 AL162424.1-201ENST00000602325 221 ntBASIC2.49□□□□□ -2.01
HOXD9P28356 AC069294.1-201ENST00000608397 350 ntBASIC2.49□□□□□ -2.01
HOXD9P28356 AC004792.1-201ENST00000614523 137 ntBASIC2.49□□□□□ -2.01
HOXD9P28356 AC005562.2-201ENST00000618264 111 ntBASIC2.49□□□□□ -2.01
HOXD9P28356 FTX_2.1-201ENST00000618816 94 ntBASIC2.49□□□□□ -2.01
HOXD9P28356 AC006001.4-201ENST00000622243 395 ntBASIC2.49□□□□□ -2.01
HOXD9P28356 AC016717.2-201ENST00000609089 5141 ntBASIC2.49□□□□□ -2.01
HOXD9P28356 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.49□□□□□ -2.01
HOXD9P28356 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
HOXD9P28356 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
HOXD9P28356 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
HOXD9P28356 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
HOXD9P28356 Y_RNA.82-201ENST00000363000 102 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 Y_RNA.92-201ENST00000363043 102 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 Y_RNA.101-201ENST00000363154 102 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 Y_RNA.235-201ENST00000364412 102 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 RNU6-740P-201ENST00000364734 105 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 Y_RNA.306-201ENST00000365015 102 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 Y_RNA.312-201ENST00000365089 102 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 Y_RNA.322-201ENST00000365151 102 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 RNY4P28-201ENST00000365281 93 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 Y_RNA.383-201ENST00000383855 97 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 Y_RNA.418-201ENST00000384029 102 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 U6atac.2-201ENST00000408644 118 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 RNU6-1199P-201ENST00000411249 104 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.48□□□□□ -2.01
HOXD9P28356 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.48□□□□□ -2.01
HOXD9P28356 EIF4EP4-201ENST00000424916 578 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 PIGPP3-201ENST00000425307 415 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 MTCO1P5-201ENST00000433573 344 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.48□□□□□ -2.01
HOXD9P28356 Y_RNA.650-201ENST00000459002 102 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 Y_RNA.777-201ENST00000516982 102 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 MIR3945-201ENST00000581853 98 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 Y_RNA.771-201ENST00000598668 102 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 AC004467.1-201ENST00000615678 330 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 AL449363.1-201ENST00000617815 186 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 Y_RNA.789-201ENST00000622480 102 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 MIR1291-201ENST00000627649 87 ntBASIC2.48□□□□□ -2.01
HOXD9P28356 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
HOXD9P28356 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.48□□□□□ -2.01
HOXD9P28356 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.47□□□□□ -2.01
HOXD9P28356 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.47□□□□□ -2.01
HOXD9P28356 SNORA25.1-201ENST00000362326 128 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 Y_RNA.83-201ENST00000363005 113 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 SNORA72.2-201ENST00000365028 127 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 U8.9-201ENST00000365667 134 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 SNORA46.1-201ENST00000391069 153 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXD9P28356 POLR2KP2-201ENST00000438155 177 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 AC004386.2-201ENST00000441858 148 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXD9P28356 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXD9P28356 AC009237.7-201ENST00000447357 229 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 PRELID3BP1-201ENST00000457142 540 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 AC080013.2-201ENST00000460866 323 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 RPS27AP9-201ENST00000477681 438 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 AC091959.1-201ENST00000495857 238 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 RNA5SP24-201ENST00000516478 95 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 RNU6-966P-201ENST00000516479 104 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 AC021269.2-201ENST00000532318 330 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 AP002001.1-203ENST00000534002 267 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 CBX3P4-201ENST00000538909 354 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.47□□□□□ -2.01
HOXD9P28356 RPL17P51-201ENST00000605218 238 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 AC011921.3-201ENST00000605540 361 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 AC046143.2-201ENST00000609789 160 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 AC064859.1-201ENST00000624741 174 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 MIR3674-201ENST00000636576 68 ntBASIC2.47□□□□□ -2.01
HOXD9P28356 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.01
HOXD9P28356 Y_RNA.180-201ENST00000363867 113 ntBASIC2.46□□□□□ -2.02
HOXD9P28356 Y_RNA.199-201ENST00000364014 102 ntBASIC2.46□□□□□ -2.02
HOXD9P28356 RNU6-1264P-201ENST00000383891 107 ntBASIC2.46□□□□□ -2.02
HOXD9P28356 RNU6-1062P-201ENST00000383908 107 ntBASIC2.46□□□□□ -2.02
HOXD9P28356 RNU6-514P-201ENST00000384208 107 ntBASIC2.46□□□□□ -2.02
HOXD9P28356 SNORA3.2-201ENST00000408221 125 ntBASIC2.46□□□□□ -2.02
HOXD9P28356 RNU2-54P-201ENST00000410299 190 ntBASIC2.46□□□□□ -2.02
HOXD9P28356 RNA5SP475-201ENST00000410568 110 ntBASIC2.46□□□□□ -2.02
HOXD9P28356 RNU4-53P-201ENST00000410828 140 ntBASIC2.46□□□□□ -2.02
HOXD9P28356 AC004866.1-201ENST00000411748 78 ntBASIC2.46□□□□□ -2.02
HOXD9P28356 AC027124.2-201ENST00000428249 105 ntBASIC2.46□□□□□ -2.02
HOXD9P28356 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXD9P28356 RPS12P2-201ENST00000439728 269 ntBASIC2.46□□□□□ -2.02
HOXD9P28356 MRPS10P1-201ENST00000448483 130 ntBASIC2.46□□□□□ -2.02
HOXD9P28356 Y_RNA.644-201ENST00000459006 113 ntBASIC2.46□□□□□ -2.02
HOXD9P28356 AC026436.1-201ENST00000510537 270 ntBASIC2.46□□□□□ -2.02
HOXD9P28356 Y_RNA.674-201ENST00000516362 113 ntBASIC2.46□□□□□ -2.02
HOXD9P28356 DEFB131C-201ENST00000528817 165 ntBASIC2.46□□□□□ -2.02
HOXD9P28356 AC105245.1-201ENST00000581934 244 ntBASIC2.46□□□□□ -2.02
HOXD9P28356 SNORD11B-201ENST00000607707 90 ntBASIC2.46□□□□□ -2.02
HOXD9P28356 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.46□□□□□ -2.02
HOXD9P28356 AC091932.3-201ENST00000624223 323 ntBASIC2.46□□□□□ -2.02
HOXD9P28356 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.46□□□□□ -2.02
HOXD9P28356 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms