Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 RPL30P10-201ENST00000488148 337 ntBASIC0.78□□□□□ -2.28
CPSF4O95639 AL133373.1-201ENST00000497098 94 ntBASIC0.78□□□□□ -2.28
CPSF4O95639 ACA59.1-201ENST00000515966 143 ntBASIC0.78□□□□□ -2.28
CPSF4O95639 RNU7-40P-201ENST00000516397 64 ntBASIC0.78□□□□□ -2.28
CPSF4O95639 SNORA31.10-201ENST00000516482 106 ntBASIC0.78□□□□□ -2.28
CPSF4O95639 RNU6-506P-201ENST00000516553 94 ntBASIC0.78□□□□□ -2.28
CPSF4O95639 RNU6-314P-201ENST00000516574 104 ntBASIC0.78□□□□□ -2.28
CPSF4O95639 RNU1-142P-201ENST00000516682 145 ntBASIC0.78□□□□□ -2.28
CPSF4O95639 RNU6-1198P-201ENST00000516904 67 ntBASIC0.78□□□□□ -2.28
CPSF4O95639 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.78□□□□□ -2.28
CPSF4O95639 AL512310.8-201ENST00000550183 120 ntBASIC0.78□□□□□ -2.28
CPSF4O95639 AC245505.1-201ENST00000556398 224 ntBASIC0.78□□□□□ -2.28
CPSF4O95639 AC022217.4-201ENST00000604389 163 ntBASIC0.78□□□□□ -2.28
CPSF4O95639 FAM71BP1-201ENST00000604431 523 ntBASIC0.78□□□□□ -2.28
CPSF4O95639 AL355802.3-201ENST00000607571 545 ntBASIC0.78□□□□□ -2.28
CPSF4O95639 AC019193.3-201ENST00000609144 554 ntBASIC0.78□□□□□ -2.28
CPSF4O95639 AC040896.1-201ENST00000613819 479 ntBASIC0.78□□□□□ -2.28
CPSF4O95639 AC048344.4-201ENST00000619744 527 ntBASIC0.78□□□□□ -2.28
CPSF4O95639 AC009033.1-201ENST00000624279 431 ntBASIC0.78□□□□□ -2.28
CPSF4O95639 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC0.78□□□□□ -2.28
CPSF4O95639 AC024614.3-201ENST00000637860 256 ntBASIC0.78□□□□□ -2.28
CPSF4O95639 MTND4P12-201ENST00000498999 1377 ntBASIC0.78□□□□□ -2.28
CPSF4O95639 RNA5SP327-201ENST00000362494 101 ntBASIC0.77□□□□□ -2.29
CPSF4O95639 RNU6-727P-201ENST00000363592 107 ntBASIC0.77□□□□□ -2.29
CPSF4O95639 Y_RNA.414-201ENST00000384011 101 ntBASIC0.77□□□□□ -2.29
CPSF4O95639 Y_RNA.415-201ENST00000384012 112 ntBASIC0.77□□□□□ -2.29
CPSF4O95639 RPL37P10-201ENST00000412884 288 ntBASIC0.77□□□□□ -2.29
CPSF4O95639 RPL30P16-201ENST00000419341 429 ntBASIC0.77□□□□□ -2.29
CPSF4O95639 DLGAP5P1-201ENST00000430307 464 ntBASIC0.77□□□□□ -2.29
CPSF4O95639 AC092473.1-201ENST00000441098 221 ntBASIC0.77□□□□□ -2.29
CPSF4O95639 MTCO2P7-201ENST00000446518 666 ntBASIC0.77□□□□□ -2.29
CPSF4O95639 HMGN1P7-201ENST00000491722 313 ntBASIC0.77□□□□□ -2.29
CPSF4O95639 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC0.77□□□□□ -2.29
CPSF4O95639 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC0.77□□□□□ -2.29
CPSF4O95639 RNU6-351P-201ENST00000516097 100 ntBASIC0.77□□□□□ -2.29
CPSF4O95639 UBL5P4-201ENST00000562584 236 ntBASIC0.77□□□□□ -2.29
CPSF4O95639 HSPE1P19-201ENST00000603327 295 ntBASIC0.77□□□□□ -2.29
CPSF4O95639 MZT1P2-201ENST00000604387 248 ntBASIC0.77□□□□□ -2.29
CPSF4O95639 AC124303.1-201ENST00000605703 360 ntBASIC0.77□□□□□ -2.29
CPSF4O95639 AC021506.2-201ENST00000612354 169 ntBASIC0.77□□□□□ -2.29
CPSF4O95639 AL359075.3-201ENST00000613288 217 ntBASIC0.77□□□□□ -2.29
CPSF4O95639 AC106800.4-201ENST00000614905 153 ntBASIC0.77□□□□□ -2.29
CPSF4O95639 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC0.77□□□□□ -2.29
CPSF4O95639 AC009248.2-201ENST00000619826 254 ntBASIC0.77□□□□□ -2.29
CPSF4O95639 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC0.77□□□□□ -2.29
CPSF4O95639 RNU6-1123P-201ENST00000362347 106 ntBASIC0.76□□□□□ -2.29
CPSF4O95639 U3.8-201ENST00000363675 217 ntBASIC0.76□□□□□ -2.29
CPSF4O95639 SNORD116-11-201ENST00000383882 92 ntBASIC0.76□□□□□ -2.29
CPSF4O95639 RNU6-306P-201ENST00000384617 107 ntBASIC0.76□□□□□ -2.29
CPSF4O95639 RNU6-1031P-201ENST00000384773 107 ntBASIC0.76□□□□□ -2.29
CPSF4O95639 RNU6-159P-201ENST00000391080 106 ntBASIC0.76□□□□□ -2.29
CPSF4O95639 AL356776.1-201ENST00000406574 447 ntBASIC0.76□□□□□ -2.29
CPSF4O95639 MIR1185-2-201ENST00000408687 86 ntBASIC0.76□□□□□ -2.29
CPSF4O95639 RNU6-1186P-201ENST00000410429 97 ntBASIC0.76□□□□□ -2.29
CPSF4O95639 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.76□□□□□ -2.29
CPSF4O95639 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC0.76□□□□□ -2.29
CPSF4O95639 Z83846.1-201ENST00000446798 265 ntBASIC0.76□□□□□ -2.29
CPSF4O95639 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC0.76□□□□□ -2.29
CPSF4O95639 RPL39P28-201ENST00000465655 155 ntBASIC0.76□□□□□ -2.29
CPSF4O95639 AC091179.3-201ENST00000474761 144 ntBASIC0.76□□□□□ -2.29
CPSF4O95639 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.76□□□□□ -2.29
CPSF4O95639 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.76□□□□□ -2.29
CPSF4O95639 RNU7-128P-201ENST00000517247 62 ntBASIC0.76□□□□□ -2.29
CPSF4O95639 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC0.76□□□□□ -2.29
CPSF4O95639 SUMO2P16-201ENST00000519475 264 ntBASIC0.76□□□□□ -2.29
CPSF4O95639 FRG2DP-202ENST00000566967 323 ntBASIC0.76□□□□□ -2.29
CPSF4O95639 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC0.76□□□□□ -2.29
CPSF4O95639 MIR4769-201ENST00000584126 77 ntBASIC0.76□□□□□ -2.29
CPSF4O95639 MIR3942-201ENST00000585264 109 ntBASIC0.76□□□□□ -2.29
CPSF4O95639 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.76□□□□□ -2.29
CPSF4O95639 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.76□□□□□ -2.29
CPSF4O95639 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.76□□□□□ -2.29
CPSF4O95639 AL133216.2-202ENST00000634512 349 ntBASIC0.76□□□□□ -2.29
CPSF4O95639 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.76□□□□□ -2.29
CPSF4O95639 Y_RNA.100-201ENST00000363141 102 ntBASIC0.75□□□□□ -2.29
CPSF4O95639 RNU6-137P-201ENST00000363680 108 ntBASIC0.75□□□□□ -2.29
CPSF4O95639 RNU4-24P-201ENST00000364565 139 ntBASIC0.75□□□□□ -2.29
CPSF4O95639 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.75□□□□□ -2.29
CPSF4O95639 RNU6-17P-201ENST00000384245 107 ntBASIC0.75□□□□□ -2.29
CPSF4O95639 RNU6-18P-201ENST00000384527 107 ntBASIC0.75□□□□□ -2.29
CPSF4O95639 RNU6-950P-201ENST00000384651 107 ntBASIC0.75□□□□□ -2.29
CPSF4O95639 RNU6-541P-201ENST00000384709 110 ntBASIC0.75□□□□□ -2.29
CPSF4O95639 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.75□□□□□ -2.29
CPSF4O95639 MTATP6P13-201ENST00000438531 667 ntBASIC0.75□□□□□ -2.29
CPSF4O95639 NDUFB4P10-201ENST00000452541 359 ntBASIC0.75□□□□□ -2.29
CPSF4O95639 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC0.75□□□□□ -2.29
CPSF4O95639 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.75□□□□□ -2.29
CPSF4O95639 MIR5696-201ENST00000578474 85 ntBASIC0.75□□□□□ -2.29
CPSF4O95639 MIR3664-201ENST00000579074 99 ntBASIC0.75□□□□□ -2.29
CPSF4O95639 MIR3973-201ENST00000579824 107 ntBASIC0.75□□□□□ -2.29
CPSF4O95639 AL390123.1-201ENST00000603216 237 ntBASIC0.75□□□□□ -2.29
CPSF4O95639 AL359821.1-201ENST00000605519 182 ntBASIC0.75□□□□□ -2.29
CPSF4O95639 MIR6857-201ENST00000613267 93 ntBASIC0.75□□□□□ -2.29
CPSF4O95639 U6.73-201ENST00000619194 103 ntBASIC0.75□□□□□ -2.29
CPSF4O95639 MIR8054-201ENST00000620877 86 ntBASIC0.75□□□□□ -2.29
CPSF4O95639 AC090617.10-201ENST00000624308 134 ntBASIC0.75□□□□□ -2.29
CPSF4O95639 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC0.74□□□□□ -2.29
CPSF4O95639 RNU6-392P-201ENST00000364926 101 ntBASIC0.74□□□□□ -2.29
CPSF4O95639 RNU6-1080P-201ENST00000383982 107 ntBASIC0.74□□□□□ -2.29
CPSF4O95639 RNU6-793P-201ENST00000384233 104 ntBASIC0.74□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 170.9 ms