Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 7SK.10-201ENST00000621414 298 ntBASIC0.26□□□□□ -2.37
SDCBPO00560 AC068787.1-201ENST00000623908 691 ntBASIC0.26□□□□□ -2.37
SDCBPO00560 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.26□□□□□ -2.37
SDCBPO00560 Y_RNA.159-201ENST00000363674 87 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 Y_RNA.330-201ENST00000365230 109 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 RNU6-925P-201ENST00000384629 104 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 RNU1-119P-201ENST00000391122 165 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.25□□□□□ -2.37
SDCBPO00560 AL356010.1-201ENST00000456364 102 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 AC022364.2-201ENST00000457963 554 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 LINC01399-202ENST00000458450 244 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 RNU6-1132P-201ENST00000459214 107 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 SNORD42A-201ENST00000459584 64 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 RPL23AP75-201ENST00000491601 451 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC0.25□□□□□ -2.37
SDCBPO00560 AC091133.4-201ENST00000511142 308 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 SNORA68.3-201ENST00000515906 83 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 RNU7-12P-201ENST00000516030 62 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 RNU6-759P-201ENST00000516740 103 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 RNU6-1116P-201ENST00000517269 99 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 MTND4LP26-201ENST00000518144 282 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 MTND1P35-201ENST00000526739 508 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 AP003716.2-201ENST00000528260 108 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 AC109810.1-201ENST00000534066 224 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 AC023157.2-201ENST00000540596 141 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.25□□□□□ -2.37
SDCBPO00560 NTS-203ENST00000551529 801 ntTSL 3 BASIC0.25□□□□□ -2.37
SDCBPO00560 SUB1P2-201ENST00000556401 297 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 AC090616.2-202ENST00000584248 222 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 MIR4438-201ENST00000585271 93 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 AC234772.3-201ENST00000602277 528 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 SNORA28-201ENST00000606769 126 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 MIR6079-201ENST00000635807 62 ntBASIC0.25□□□□□ -2.37
SDCBPO00560 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.24□□□□□ -2.37
SDCBPO00560 RNU4-21P-201ENST00000362802 126 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 RNA5SP264-201ENST00000363115 107 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 RNU6-1329P-201ENST00000365664 107 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 RNU6-517P-201ENST00000384362 110 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 RNU6-1106P-201ENST00000390845 107 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 MIR936-201ENST00000401264 98 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 AL049545.1-201ENST00000401856 572 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 MTCO2P11-201ENST00000431069 680 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.24□□□□□ -2.37
SDCBPO00560 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC0.24□□□□□ -2.37
SDCBPO00560 RPL23AP50-201ENST00000434149 455 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 AL031667.1-201ENST00000440222 725 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 MTCO2P7-201ENST00000446518 666 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.24□□□□□ -2.37
SDCBPO00560 RNU7-125P-201ENST00000458760 62 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 SNORD65B-201ENST00000459126 73 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 U7.7-201ENST00000459276 60 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 RNU7-94P-201ENST00000459576 63 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 HMGN2P26-201ENST00000463169 339 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC0.24□□□□□ -2.37
SDCBPO00560 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC0.24□□□□□ -2.37
SDCBPO00560 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.24□□□□□ -2.37
SDCBPO00560 RNU6-58P-201ENST00000517143 103 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 AC060788.1-201ENST00000521318 469 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 AC027288.2-201ENST00000553028 243 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.24□□□□□ -2.37
SDCBPO00560 MIR3913-1-201ENST00000577744 102 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 MIR4711-201ENST00000578274 70 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 MIR4424-201ENST00000585257 86 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.24□□□□□ -2.37
SDCBPO00560 AC100810.6-201ENST00000638068 285 ntBASIC0.24□□□□□ -2.37
SDCBPO00560 Y_RNA.265-201ENST00000364677 108 ntBASIC0.23□□□□□ -2.37
SDCBPO00560 VTRNA1-3-201ENST00000365645 89 ntBASIC0.23□□□□□ -2.37
SDCBPO00560 Y_RNA.415-201ENST00000384012 112 ntBASIC0.23□□□□□ -2.37
SDCBPO00560 MIR1185-1-201ENST00000408598 86 ntBASIC0.23□□□□□ -2.37
SDCBPO00560 RNU6-325P-201ENST00000411132 105 ntBASIC0.23□□□□□ -2.37
SDCBPO00560 MRPS10P1-201ENST00000448483 130 ntBASIC0.23□□□□□ -2.37
SDCBPO00560 AC073415.1-201ENST00000449240 153 ntBASIC0.23□□□□□ -2.37
SDCBPO00560 SNORD11.1-201ENST00000459482 85 ntBASIC0.23□□□□□ -2.37
SDCBPO00560 U8.21-201ENST00000459536 136 ntBASIC0.23□□□□□ -2.37
SDCBPO00560 AP000870.1-201ENST00000472927 406 ntBASIC0.23□□□□□ -2.37
SDCBPO00560 AC016957.1-201ENST00000534895 309 ntBASIC0.23□□□□□ -2.37
SDCBPO00560 AC004223.2-201ENST00000590309 544 ntBASIC0.23□□□□□ -2.37
SDCBPO00560 7SK.7-201ENST00000603504 247 ntBASIC0.23□□□□□ -2.37
SDCBPO00560 RNU6-94P-201ENST00000607728 107 ntBASIC0.23□□□□□ -2.37
SDCBPO00560 uc_338.34-201ENST00000617467 174 ntBASIC0.23□□□□□ -2.37
SDCBPO00560 AL008636.1-201ENST00000625038 1018 ntBASIC0.23□□□□□ -2.37
SDCBPO00560 MTND4P12-201ENST00000498999 1377 ntBASIC0.22□□□□□ -2.37
SDCBPO00560 SNORA1B-201ENST00000362535 133 ntBASIC0.22□□□□□ -2.37
SDCBPO00560 SNORA25.3-201ENST00000363205 127 ntBASIC0.22□□□□□ -2.37
SDCBPO00560 RNU6-727P-201ENST00000363592 107 ntBASIC0.22□□□□□ -2.37
SDCBPO00560 RNU6-553P-201ENST00000364047 96 ntBASIC0.22□□□□□ -2.37
SDCBPO00560 RNU6-784P-201ENST00000384330 106 ntBASIC0.22□□□□□ -2.37
SDCBPO00560 MIR1287-201ENST00000408492 90 ntBASIC0.22□□□□□ -2.37
SDCBPO00560 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC0.22□□□□□ -2.37
SDCBPO00560 Z82188.1-201ENST00000436709 154 ntBASIC0.22□□□□□ -2.37
SDCBPO00560 AC091021.1-201ENST00000468051 388 ntBASIC0.22□□□□□ -2.37
SDCBPO00560 RNU6-1038P-201ENST00000516516 104 ntBASIC0.22□□□□□ -2.37
SDCBPO00560 MDM2-233ENST00000545204 398 ntTSL 5 BASIC0.22□□□□□ -2.37
SDCBPO00560 AL118558.2-201ENST00000556294 238 ntBASIC0.22□□□□□ -2.37
SDCBPO00560 AC011195.1-201ENST00000578177 177 ntBASIC0.22□□□□□ -2.37
SDCBPO00560 CPDP1-201ENST00000579660 283 ntBASIC0.22□□□□□ -2.37
SDCBPO00560 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC0.22□□□□□ -2.37
SDCBPO00560 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.22□□□□□ -2.37
SDCBPO00560 AC091178.2-201ENST00000584401 117 ntBASIC0.22□□□□□ -2.37
SDCBPO00560 AC008536.2-201ENST00000607284 349 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 127.5 ms