Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 RNU6-723P-201ENST00000383973 107 ntBASIC-0.49□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU6-224P-201ENST00000384055 107 ntBASIC-0.49□□□□□ -2.49
TRAV1-2A0A0B4J238 Y_RNA.508-201ENST00000384502 114 ntBASIC-0.49□□□□□ -2.49
TRAV1-2A0A0B4J238 MIR892B-201ENST00000401279 77 ntBASIC-0.49□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU4-46P-201ENST00000410818 138 ntBASIC-0.49□□□□□ -2.49
TRAV1-2A0A0B4J238 AC005042.3-201ENST00000453230 174 ntBASIC-0.49□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU7-165P-201ENST00000458864 60 ntBASIC-0.49□□□□□ -2.49
TRAV1-2A0A0B4J238 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC-0.49□□□□□ -2.49
TRAV1-2A0A0B4J238 MRPS36P4-201ENST00000534436 298 ntBASIC-0.49□□□□□ -2.49
TRAV1-2A0A0B4J238 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC-0.49□□□□□ -2.49
TRAV1-2A0A0B4J238 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC-0.49□□□□□ -2.49
TRAV1-2A0A0B4J238 AP000907.4-201ENST00000604143 237 ntBASIC-0.49□□□□□ -2.49
TRAV1-2A0A0B4J238 AL355073.2-201ENST00000612106 557 ntBASIC-0.49□□□□□ -2.49
TRAV1-2A0A0B4J238 AL078596.1-201ENST00000624856 447 ntBASIC-0.49□□□□□ -2.49
TRAV1-2A0A0B4J238 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC-0.49□□□□□ -2.49
TRAV1-2A0A0B4J238 ZNF204P-201ENST00000416749 2397 ntBASIC-0.49□□□□□ -2.49
TRAV1-2A0A0B4J238 SNORA1.1-201ENST00000364671 133 ntBASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 Y_RNA.280-201ENST00000364765 112 ntBASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU6-925P-201ENST00000384629 104 ntBASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 MIR489-201ENST00000384923 84 ntBASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 AL049545.1-201ENST00000401856 572 ntBASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 MIR1185-2-201ENST00000408687 86 ntBASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 RPS26P42-201ENST00000413485 326 ntBASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 ZNF885P-201ENST00000420174 1098 ntBASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 Z99497.1-201ENST00000421282 135 ntBASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 Z98949.2-201ENST00000440996 144 ntBASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 AC007327.1-201ENST00000447461 264 ntBASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 AC007215.1-201ENST00000464893 276 ntBASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU6-848P-201ENST00000515948 107 ntBASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU6-617P-201ENST00000516147 107 ntBASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU6-473P-201ENST00000516164 107 ntBASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU6-1049P-201ENST00000516414 107 ntBASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 RN7SKP287-201ENST00000516546 266 ntBASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 AC009712.1-201ENST00000564938 316 ntBASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 AC025449.1-201ENST00000603896 529 ntBASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 AC098679.4-201ENST00000624241 654 ntBASIC-0.5□□□□□ -2.49
TRAV1-2A0A0B4J238 Y_RNA.100-201ENST00000363141 102 ntBASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 Y_RNA.115-201ENST00000363272 98 ntBASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 MIR454-201ENST00000390180 115 ntBASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU6-269P-201ENST00000391077 97 ntBASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 MTND3P20-201ENST00000407663 186 ntBASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 ZNF736P1Y-201ENST00000440402 1276 ntBASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 ZNF736P12Y-201ENST00000443152 1243 ntBASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 AC069271.1-201ENST00000445577 156 ntBASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 EXOSC3P1-201ENST00000448649 500 ntBASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 ZNF736P4Y-201ENST00000454995 1243 ntBASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 RPL17P19-201ENST00000489069 552 ntBASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU2-56P-201ENST00000516826 190 ntBASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU6-782P-201ENST00000516852 104 ntBASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 AC104383.1-201ENST00000530297 370 ntBASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 AC093027.1-201ENST00000546698 429 ntBASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 MIR4307-201ENST00000582802 84 ntBASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 AL109933.3-201ENST00000619095 188 ntBASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 AC068792.1-201ENST00000621354 417 ntBASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 AC068880.4-201ENST00000623082 495 ntBASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 AC027279.3-201ENST00000625055 122 ntBASIC-0.51□□□□□ -2.49
TRAV1-2A0A0B4J238 SNORA1B-201ENST00000362535 133 ntBASIC-0.52□□□□□ -2.49
TRAV1-2A0A0B4J238 Y_RNA.112-201ENST00000363250 102 ntBASIC-0.52□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU6-934P-201ENST00000365154 107 ntBASIC-0.52□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU6-39P-201ENST00000384344 107 ntBASIC-0.52□□□□□ -2.49
TRAV1-2A0A0B4J238 Y_RNA.567-201ENST00000384736 106 ntBASIC-0.52□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU2-8P-201ENST00000410727 190 ntBASIC-0.52□□□□□ -2.49
TRAV1-2A0A0B4J238 MTND1P4-201ENST00000435196 415 ntBASIC-0.52□□□□□ -2.49
TRAV1-2A0A0B4J238 PCNPP5-201ENST00000452246 481 ntBASIC-0.52□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU7-159P-201ENST00000459284 62 ntBASIC-0.52□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU7-43P-201ENST00000516554 64 ntBASIC-0.52□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU6-341P-201ENST00000516973 96 ntBASIC-0.52□□□□□ -2.49
TRAV1-2A0A0B4J238 RNA5SP337-201ENST00000517007 109 ntBASIC-0.52□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU6-58P-201ENST00000517143 103 ntBASIC-0.52□□□□□ -2.49
TRAV1-2A0A0B4J238 AC091178.2-201ENST00000584401 117 ntBASIC-0.52□□□□□ -2.49
TRAV1-2A0A0B4J238 AC121334.2-201ENST00000605387 271 ntBASIC-0.52□□□□□ -2.49
TRAV1-2A0A0B4J238 AC006386.1-201ENST00000619436 415 ntBASIC-0.52□□□□□ -2.49
TRAV1-2A0A0B4J238 AC067863.3-201ENST00000624172 122 ntBASIC-0.52□□□□□ -2.49
TRAV1-2A0A0B4J238 MTND4P4-201ENST00000439033 1366 ntBASIC-0.53□□□□□ -2.49
TRAV1-2A0A0B4J238 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC-0.53□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU6-1303P-201ENST00000364841 107 ntBASIC-0.53□□□□□ -2.49
TRAV1-2A0A0B4J238 SNORD114-12-201ENST00000365400 75 ntBASIC-0.53□□□□□ -2.49
TRAV1-2A0A0B4J238 Y_RNA.355-201ENST00000365462 98 ntBASIC-0.53□□□□□ -2.49
TRAV1-2A0A0B4J238 MIR452-201ENST00000385020 85 ntBASIC-0.53□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU2-39P-201ENST00000410604 198 ntBASIC-0.53□□□□□ -2.49
TRAV1-2A0A0B4J238 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC-0.53□□□□□ -2.49
TRAV1-2A0A0B4J238 AC010493.1-201ENST00000513479 292 ntBASIC-0.53□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU6-344P-201ENST00000516635 111 ntBASIC-0.53□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU6-63P-201ENST00000516690 95 ntBASIC-0.53□□□□□ -2.49
TRAV1-2A0A0B4J238 RNA5SP454-201ENST00000517231 127 ntBASIC-0.53□□□□□ -2.49
TRAV1-2A0A0B4J238 AC090897.1-201ENST00000580909 226 ntBASIC-0.53□□□□□ -2.49
TRAV1-2A0A0B4J238 MIR4676-201ENST00000583078 72 ntBASIC-0.53□□□□□ -2.49
TRAV1-2A0A0B4J238 MIR4438-201ENST00000585271 93 ntBASIC-0.53□□□□□ -2.49
TRAV1-2A0A0B4J238 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC-0.53□□□□□ -2.49
TRAV1-2A0A0B4J238 AC005776.1-201ENST00000603164 290 ntBASIC-0.53□□□□□ -2.49
TRAV1-2A0A0B4J238 Pinc.1-201ENST00000616452 154 ntBASIC-0.53□□□□□ -2.49
TRAV1-2A0A0B4J238 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC-0.54□□□□□ -2.5
TRAV1-2A0A0B4J238 RNU5B-2P-201ENST00000363036 113 ntBASIC-0.54□□□□□ -2.5
TRAV1-2A0A0B4J238 RNA5SP457-201ENST00000363657 124 ntBASIC-0.54□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms