Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 AL161670.1-201ENST00000554348 137 ntBASIC2.72□□□□□ -1.97
PCDHA1Q9Y5I3 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.72□□□□□ -1.97
PCDHA1Q9Y5I3 MIR4300-201ENST00000581016 96 ntBASIC2.72□□□□□ -1.97
PCDHA1Q9Y5I3 AP000942.4-201ENST00000604811 241 ntBASIC2.72□□□□□ -1.97
PCDHA1Q9Y5I3 AC067747.1-201ENST00000608026 250 ntBASIC2.72□□□□□ -1.97
PCDHA1Q9Y5I3 U4.1-201ENST00000620349 87 ntBASIC2.72□□□□□ -1.97
PCDHA1Q9Y5I3 MIR1248-201ENST00000629190 106 ntBASIC2.72□□□□□ -1.97
PCDHA1Q9Y5I3 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
PCDHA1Q9Y5I3 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
PCDHA1Q9Y5I3 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.72□□□□□ -1.97
PCDHA1Q9Y5I3 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
PCDHA1Q9Y5I3 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.97
PCDHA1Q9Y5I3 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
PCDHA1Q9Y5I3 Y_RNA.26-201ENST00000362539 101 ntBASIC2.71□□□□□ -1.98
PCDHA1Q9Y5I3 SNORD31B-201ENST00000364977 69 ntBASIC2.71□□□□□ -1.98
PCDHA1Q9Y5I3 RNU6-20P-201ENST00000384106 107 ntBASIC2.71□□□□□ -1.98
PCDHA1Q9Y5I3 RNU6-713P-201ENST00000384761 107 ntBASIC2.71□□□□□ -1.98
PCDHA1Q9Y5I3 SNORA3.2-201ENST00000408221 125 ntBASIC2.71□□□□□ -1.98
PCDHA1Q9Y5I3 RNU2-25P-201ENST00000411041 191 ntBASIC2.71□□□□□ -1.98
PCDHA1Q9Y5I3 RNU6-625P-201ENST00000459412 107 ntBASIC2.71□□□□□ -1.98
PCDHA1Q9Y5I3 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC2.71□□□□□ -1.98
PCDHA1Q9Y5I3 AP003733.2-201ENST00000529409 171 ntBASIC2.71□□□□□ -1.98
PCDHA1Q9Y5I3 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC2.71□□□□□ -1.98
PCDHA1Q9Y5I3 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.71□□□□□ -1.98
PCDHA1Q9Y5I3 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC2.71□□□□□ -1.98
PCDHA1Q9Y5I3 MIR376A1-201ENST00000616574 68 ntBASIC2.71□□□□□ -1.98
PCDHA1Q9Y5I3 U4atac.1-201ENST00000618345 95 ntBASIC2.71□□□□□ -1.98
PCDHA1Q9Y5I3 VTRNA1-1-201ENST00000363120 99 ntBASIC2.7□□□□□ -1.98
PCDHA1Q9Y5I3 U3.8-201ENST00000363675 217 ntBASIC2.7□□□□□ -1.98
PCDHA1Q9Y5I3 RNU6-1264P-201ENST00000383891 107 ntBASIC2.7□□□□□ -1.98
PCDHA1Q9Y5I3 RNU6-1310P-201ENST00000384153 107 ntBASIC2.7□□□□□ -1.98
PCDHA1Q9Y5I3 Y_RNA.512-201ENST00000384518 102 ntBASIC2.7□□□□□ -1.98
PCDHA1Q9Y5I3 HMGN2P35-201ENST00000412164 270 ntBASIC2.7□□□□□ -1.98
PCDHA1Q9Y5I3 AL390729.2-201ENST00000416137 156 ntBASIC2.7□□□□□ -1.98
PCDHA1Q9Y5I3 RAB28P5-201ENST00000427490 651 ntBASIC2.7□□□□□ -1.98
PCDHA1Q9Y5I3 RNA5SP281-201ENST00000516504 135 ntBASIC2.7□□□□□ -1.98
PCDHA1Q9Y5I3 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.7□□□□□ -1.98
PCDHA1Q9Y5I3 AC004817.2-201ENST00000561794 651 ntBASIC2.7□□□□□ -1.98
PCDHA1Q9Y5I3 MIR3149-201ENST00000584629 83 ntBASIC2.7□□□□□ -1.98
PCDHA1Q9Y5I3 ZNF658B-202ENST00000615961 3375 ntBASIC2.7□□□□□ -1.98
PCDHA1Q9Y5I3 AC007336.1-201ENST00000576365 3828 ntBASIC2.7□□□□□ -1.98
PCDHA1Q9Y5I3 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.7□□□□□ -1.98
PCDHA1Q9Y5I3 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
PCDHA1Q9Y5I3 MIR21-201ENST00000362134 72 ntBASIC2.69□□□□□ -1.98
PCDHA1Q9Y5I3 SNORD87-201ENST00000364849 89 ntBASIC2.69□□□□□ -1.98
PCDHA1Q9Y5I3 RNU6-937P-201ENST00000384325 106 ntBASIC2.69□□□□□ -1.98
PCDHA1Q9Y5I3 Y_RNA.570-201ENST00000384750 101 ntBASIC2.69□□□□□ -1.98
PCDHA1Q9Y5I3 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.69□□□□□ -1.98
PCDHA1Q9Y5I3 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC2.69□□□□□ -1.98
PCDHA1Q9Y5I3 Z98742.3-201ENST00000418637 326 ntBASIC2.69□□□□□ -1.98
PCDHA1Q9Y5I3 IPO7P1-201ENST00000442031 636 ntBASIC2.69□□□□□ -1.98
PCDHA1Q9Y5I3 AC018868.1-201ENST00000491307 315 ntBASIC2.69□□□□□ -1.98
PCDHA1Q9Y5I3 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.69□□□□□ -1.98
PCDHA1Q9Y5I3 ATP5EP1-201ENST00000510257 156 ntBASIC2.69□□□□□ -1.98
PCDHA1Q9Y5I3 RNU1-41P-201ENST00000516161 162 ntBASIC2.69□□□□□ -1.98
PCDHA1Q9Y5I3 RNU1-48P-201ENST00000516400 162 ntBASIC2.69□□□□□ -1.98
PCDHA1Q9Y5I3 RNU6-965P-201ENST00000516721 96 ntBASIC2.69□□□□□ -1.98
PCDHA1Q9Y5I3 RNU1-117P-201ENST00000517041 158 ntBASIC2.69□□□□□ -1.98
PCDHA1Q9Y5I3 AC005176.2-201ENST00000596933 147 ntBASIC2.69□□□□□ -1.98
PCDHA1Q9Y5I3 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.69□□□□□ -1.98
PCDHA1Q9Y5I3 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.69□□□□□ -1.98
PCDHA1Q9Y5I3 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
PCDHA1Q9Y5I3 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.68□□□□□ -1.98
PCDHA1Q9Y5I3 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
PCDHA1Q9Y5I3 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
PCDHA1Q9Y5I3 U8.2-201ENST00000363156 134 ntBASIC2.68□□□□□ -1.98
PCDHA1Q9Y5I3 RNU6-1026P-201ENST00000384465 108 ntBASIC2.68□□□□□ -1.98
PCDHA1Q9Y5I3 MIR1283-1-201ENST00000408494 87 ntBASIC2.68□□□□□ -1.98
PCDHA1Q9Y5I3 AL135786.1-201ENST00000415892 214 ntBASIC2.68□□□□□ -1.98
PCDHA1Q9Y5I3 HMGN2P18-201ENST00000450680 270 ntBASIC2.68□□□□□ -1.98
PCDHA1Q9Y5I3 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.68□□□□□ -1.98
PCDHA1Q9Y5I3 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.68□□□□□ -1.98
PCDHA1Q9Y5I3 MIR5007-201ENST00000583098 95 ntBASIC2.68□□□□□ -1.98
PCDHA1Q9Y5I3 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
PCDHA1Q9Y5I3 MIR3674-201ENST00000636576 68 ntBASIC2.68□□□□□ -1.98
PCDHA1Q9Y5I3 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.68□□□□□ -1.98
PCDHA1Q9Y5I3 RNU6-545P-201ENST00000362681 104 ntBASIC2.67□□□□□ -1.98
PCDHA1Q9Y5I3 Y_RNA.193-201ENST00000363979 102 ntBASIC2.67□□□□□ -1.98
PCDHA1Q9Y5I3 RNU6-1305P-201ENST00000364353 104 ntBASIC2.67□□□□□ -1.98
PCDHA1Q9Y5I3 Y_RNA.376-201ENST00000365638 108 ntBASIC2.67□□□□□ -1.98
PCDHA1Q9Y5I3 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.67□□□□□ -1.98
PCDHA1Q9Y5I3 RNU6-574P-201ENST00000384265 107 ntBASIC2.67□□□□□ -1.98
PCDHA1Q9Y5I3 RNU6-472P-201ENST00000384299 107 ntBASIC2.67□□□□□ -1.98
PCDHA1Q9Y5I3 AL357139.1-201ENST00000407792 426 ntBASIC2.67□□□□□ -1.98
PCDHA1Q9Y5I3 RNU2-20P-201ENST00000410425 191 ntBASIC2.67□□□□□ -1.98
PCDHA1Q9Y5I3 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.67□□□□□ -1.98
PCDHA1Q9Y5I3 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.67□□□□□ -1.98
PCDHA1Q9Y5I3 AC016925.1-201ENST00000458303 298 ntBASIC2.67□□□□□ -1.98
PCDHA1Q9Y5I3 HMGN2P9-201ENST00000476875 229 ntBASIC2.67□□□□□ -1.98
PCDHA1Q9Y5I3 AC098869.1-201ENST00000481627 292 ntBASIC2.67□□□□□ -1.98
PCDHA1Q9Y5I3 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC2.67□□□□□ -1.98
PCDHA1Q9Y5I3 U6.104-201ENST00000637979 90 ntBASIC2.67□□□□□ -1.98
PCDHA1Q9Y5I3 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 snoU2_19.2-201ENST00000363024 80 ntBASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 SNORA25B-201ENST00000365507 128 ntBASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 Y_RNA.518-201ENST00000384552 113 ntBASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 MIR548B-201ENST00000385247 97 ntBASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 Y_RNA.581-201ENST00000391017 97 ntBASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 AL139095.1-201ENST00000404326 391 ntBASIC2.66□□□□□ -1.98
PCDHA1Q9Y5I3 MIR1302-6-201ENST00000408466 90 ntBASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 136 ms