Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC011494.1-201ENST00000596454 237 ntBASIC1.47□□□□□ -2.17
FOXA2Q9Y261 AP001485.1-201ENST00000604799 199 ntBASIC1.47□□□□□ -2.17
FOXA2Q9Y261 AL359075.3-201ENST00000613288 217 ntBASIC1.47□□□□□ -2.17
FOXA2Q9Y261 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.47□□□□□ -2.17
FOXA2Q9Y261 AL133216.2-202ENST00000634512 349 ntBASIC1.47□□□□□ -2.17
FOXA2Q9Y261 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.47□□□□□ -2.17
FOXA2Q9Y261 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.47□□□□□ -2.17
FOXA2Q9Y261 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.46□□□□□ -2.18
FOXA2Q9Y261 RNU6-271P-201ENST00000363858 105 ntBASIC1.46□□□□□ -2.18
FOXA2Q9Y261 RNU6-593P-201ENST00000364716 112 ntBASIC1.46□□□□□ -2.18
FOXA2Q9Y261 RNU6-700P-201ENST00000391043 107 ntBASIC1.46□□□□□ -2.18
FOXA2Q9Y261 RNU1-78P-201ENST00000391248 165 ntBASIC1.46□□□□□ -2.18
FOXA2Q9Y261 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.46□□□□□ -2.18
FOXA2Q9Y261 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC1.46□□□□□ -2.18
FOXA2Q9Y261 NDUFAF4P4-201ENST00000454883 502 ntBASIC1.46□□□□□ -2.18
FOXA2Q9Y261 snoU13.15-201ENST00000459407 104 ntBASIC1.46□□□□□ -2.18
FOXA2Q9Y261 snoU13.26-201ENST00000459452 105 ntBASIC1.46□□□□□ -2.18
FOXA2Q9Y261 AC069439.1-201ENST00000494739 167 ntBASIC1.46□□□□□ -2.18
FOXA2Q9Y261 AL163195.1-201ENST00000496941 348 ntBASIC1.46□□□□□ -2.18
FOXA2Q9Y261 AC018710.1-201ENST00000506509 158 ntBASIC1.46□□□□□ -2.18
FOXA2Q9Y261 RNU6-1114P-201ENST00000516022 107 ntBASIC1.46□□□□□ -2.18
FOXA2Q9Y261 RNU6-107P-201ENST00000516643 102 ntBASIC1.46□□□□□ -2.18
FOXA2Q9Y261 MIR4419B-201ENST00000577260 68 ntBASIC1.46□□□□□ -2.18
FOXA2Q9Y261 MIR3618-201ENST00000580330 88 ntBASIC1.46□□□□□ -2.18
FOXA2Q9Y261 MZT1P2-201ENST00000604387 248 ntBASIC1.46□□□□□ -2.18
FOXA2Q9Y261 AC095038.3-201ENST00000634439 195 ntBASIC1.46□□□□□ -2.18
FOXA2Q9Y261 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.46□□□□□ -2.18
FOXA2Q9Y261 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.46□□□□□ -2.18
FOXA2Q9Y261 RNU6-222P-201ENST00000362438 107 ntBASIC1.45□□□□□ -2.18
FOXA2Q9Y261 Y_RNA.184-201ENST00000363884 108 ntBASIC1.45□□□□□ -2.18
FOXA2Q9Y261 SNORA4.2-201ENST00000365313 147 ntBASIC1.45□□□□□ -2.18
FOXA2Q9Y261 Y_RNA.473-201ENST00000384333 102 ntBASIC1.45□□□□□ -2.18
FOXA2Q9Y261 MIR548K-201ENST00000408406 116 ntBASIC1.45□□□□□ -2.18
FOXA2Q9Y261 AL121890.1-201ENST00000435457 205 ntBASIC1.45□□□□□ -2.18
FOXA2Q9Y261 AC079140.2-201ENST00000506193 142 ntBASIC1.45□□□□□ -2.18
FOXA2Q9Y261 AC026782.1-201ENST00000512952 449 ntBASIC1.45□□□□□ -2.18
FOXA2Q9Y261 Y_RNA.683-201ENST00000516508 93 ntBASIC1.45□□□□□ -2.18
FOXA2Q9Y261 RNU6-358P-201ENST00000516564 75 ntBASIC1.45□□□□□ -2.18
FOXA2Q9Y261 APOOP3-201ENST00000536787 586 ntBASIC1.45□□□□□ -2.18
FOXA2Q9Y261 AC093023.1-201ENST00000547375 507 ntBASIC1.45□□□□□ -2.18
FOXA2Q9Y261 AC110588.1-201ENST00000559699 137 ntBASIC1.45□□□□□ -2.18
FOXA2Q9Y261 AC005668.1-201ENST00000571142 476 ntBASIC1.45□□□□□ -2.18
FOXA2Q9Y261 AC084782.3-201ENST00000612282 578 ntBASIC1.45□□□□□ -2.18
FOXA2Q9Y261 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.45□□□□□ -2.18
FOXA2Q9Y261 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.45□□□□□ -2.18
FOXA2Q9Y261 MTND5P16-201ENST00000460269 1703 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 MTND5P35-201ENST00000557537 1720 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 Y_RNA.72-201ENST00000362894 103 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 Y_RNA.106-201ENST00000363189 100 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 RNU6-601P-201ENST00000384540 107 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 RNU6-950P-201ENST00000384651 107 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 RNA5SP109-201ENST00000391010 116 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 RNU1-139P-201ENST00000391307 165 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 RNU6ATAC25P-201ENST00000408798 117 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 Y_RNA.594-201ENST00000410373 140 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 RNU6-1050P-201ENST00000410388 107 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 RNU6-1186P-201ENST00000410429 97 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.44□□□□□ -2.18
FOXA2Q9Y261 RNU7-87P-201ENST00000459343 62 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 RPS26P55-201ENST00000471178 356 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 RPS26P45-201ENST00000471748 340 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 RNA5SP445-201ENST00000515889 115 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 AK6P2-201ENST00000549020 471 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 AL121579.1-201ENST00000555129 305 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 AL137100.2-201ENST00000555786 315 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 MIR3122-201ENST00000577243 73 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.44□□□□□ -2.18
FOXA2Q9Y261 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.44□□□□□ -2.18
FOXA2Q9Y261 AC022432.1-201ENST00000595739 310 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 AC080078.2-201ENST00000603766 501 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 U6atac.1-201ENST00000616025 117 ntBASIC1.44□□□□□ -2.18
FOXA2Q9Y261 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
FOXA2Q9Y261 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
FOXA2Q9Y261 SNORD33-201ENST00000362761 85 ntBASIC1.43□□□□□ -2.18
FOXA2Q9Y261 SNORD1A-201ENST00000364968 72 ntBASIC1.43□□□□□ -2.18
FOXA2Q9Y261 RNU6-203P-201ENST00000384038 104 ntBASIC1.43□□□□□ -2.18
FOXA2Q9Y261 SNORA40.18-201ENST00000391200 128 ntBASIC1.43□□□□□ -2.18
FOXA2Q9Y261 RPL37P10-201ENST00000412884 288 ntBASIC1.43□□□□□ -2.18
FOXA2Q9Y261 AC010095.1-201ENST00000443543 144 ntBASIC1.43□□□□□ -2.18
FOXA2Q9Y261 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.43□□□□□ -2.18
FOXA2Q9Y261 MTND4P18-201ENST00000447010 465 ntBASIC1.43□□□□□ -2.18
FOXA2Q9Y261 AC245517.4-201ENST00000448601 281 ntBASIC1.43□□□□□ -2.18
FOXA2Q9Y261 RNU1-98P-201ENST00000458992 160 ntBASIC1.43□□□□□ -2.18
FOXA2Q9Y261 Y_RNA.708-201ENST00000516950 96 ntBASIC1.43□□□□□ -2.18
FOXA2Q9Y261 AC019176.1-201ENST00000518519 225 ntBASIC1.43□□□□□ -2.18
FOXA2Q9Y261 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.43□□□□□ -2.18
FOXA2Q9Y261 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC1.43□□□□□ -2.18
FOXA2Q9Y261 PISRT1.1-201ENST00000616930 107 ntBASIC1.43□□□□□ -2.18
FOXA2Q9Y261 AC098679.4-201ENST00000624241 654 ntBASIC1.43□□□□□ -2.18
FOXA2Q9Y261 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
FOXA2Q9Y261 SNORD48-201ENST00000364953 64 ntBASIC1.42□□□□□ -2.18
FOXA2Q9Y261 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
FOXA2Q9Y261 MIR190B-201ENST00000401119 79 ntBASIC1.42□□□□□ -2.18
FOXA2Q9Y261 MRPL35P1-201ENST00000404272 572 ntBASIC1.42□□□□□ -2.18
FOXA2Q9Y261 MTCYBP10-201ENST00000424905 650 ntBASIC1.42□□□□□ -2.18
FOXA2Q9Y261 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.42□□□□□ -2.18
FOXA2Q9Y261 AL353997.1-201ENST00000432936 108 ntBASIC1.42□□□□□ -2.18
FOXA2Q9Y261 AC003989.2-201ENST00000440224 169 ntBASIC1.42□□□□□ -2.18
FOXA2Q9Y261 Y_RNA.670-201ENST00000516255 105 ntBASIC1.42□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 313.3 ms