Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AL607023.1-201ENST00000620045 248 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 Y_RNA.68-201ENST00000362881 102 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 RNU6-1097P-201ENST00000363586 107 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 SNORA20.2-201ENST00000383922 131 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 MIR562-201ENST00000384894 95 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC0.2□□□□□ -2.38
SCN3AQ9NY46 SNORA16.2-201ENST00000390991 127 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 RNA5SP127-201ENST00000411051 133 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 RPS3AP1-201ENST00000413190 320 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC0.2□□□□□ -2.38
SCN3AQ9NY46 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC0.2□□□□□ -2.38
SCN3AQ9NY46 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.2□□□□□ -2.38
SCN3AQ9NY46 MTATP6P14-201ENST00000455189 673 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 RNU6-1037P-201ENST00000459571 107 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 AC091021.1-201ENST00000468051 388 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 MTND2P14-201ENST00000482139 351 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 AC025465.4-201ENST00000513422 638 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 AC010493.1-201ENST00000513479 292 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC0.2□□□□□ -2.38
SCN3AQ9NY46 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC0.2□□□□□ -2.38
SCN3AQ9NY46 AL353765.1-201ENST00000605514 183 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 AL121992.2-201ENST00000606262 256 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.2□□□□□ -2.38
SCN3AQ9NY46 AC100810.6-201ENST00000638068 285 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 Y_RNA.280-201ENST00000364765 112 ntBASIC0.19□□□□□ -2.38
SCN3AQ9NY46 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC0.19□□□□□ -2.38
SCN3AQ9NY46 TIMM9P3-201ENST00000428659 274 ntBASIC0.19□□□□□ -2.38
SCN3AQ9NY46 AC009961.2-201ENST00000435771 251 ntBASIC0.19□□□□□ -2.38
SCN3AQ9NY46 BET1P1-201ENST00000482276 359 ntBASIC0.19□□□□□ -2.38
SCN3AQ9NY46 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.19□□□□□ -2.38
SCN3AQ9NY46 AC097065.2-201ENST00000608159 533 ntBASIC0.19□□□□□ -2.38
SCN3AQ9NY46 AL133173.2-201ENST00000614270 90 ntBASIC0.19□□□□□ -2.38
SCN3AQ9NY46 AC137590.2-201ENST00000619709 240 ntBASIC0.19□□□□□ -2.38
SCN3AQ9NY46 RNU6-833P-201ENST00000363486 107 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 RNU4-76P-201ENST00000364509 141 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 SNORD70.1-201ENST00000391007 85 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 CETN4P-201ENST00000432407 469 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 RPL23AP50-201ENST00000434149 455 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.18□□□□□ -2.38
SCN3AQ9NY46 RNU7-182P-201ENST00000459009 62 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 AC091435.1-201ENST00000505442 584 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 SNORD27.1-201ENST00000516319 72 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 RNA5SP54-201ENST00000516951 92 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC0.18□□□□□ -2.38
SCN3AQ9NY46 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC0.18□□□□□ -2.38
SCN3AQ9NY46 MIR4514-201ENST00000581410 57 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 AC009161.2-201ENST00000624626 138 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 RNU5B-2P-201ENST00000363036 113 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 SNORA33-201ENST00000363664 130 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 SNORD115-7-201ENST00000365306 82 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 RNU6-348P-201ENST00000384386 107 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC0.18□□□□□ -2.38
SCN3AQ9NY46 AC004854.1-201ENST00000440356 349 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC0.18□□□□□ -2.38
SCN3AQ9NY46 HMGN2P26-201ENST00000463169 339 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC0.18□□□□□ -2.38
SCN3AQ9NY46 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC0.18□□□□□ -2.38
SCN3AQ9NY46 RNU6-1220P-201ENST00000517126 108 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 MRPS36P4-201ENST00000534436 298 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC0.18□□□□□ -2.38
SCN3AQ9NY46 MIR3682-201ENST00000581338 84 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 MIR4438-201ENST00000585271 93 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 BNIP3P39-201ENST00000601077 554 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 RMST_3.1-201ENST00000611651 109 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC0.18□□□□□ -2.38
SCN3AQ9NY46 ANKRD20A17P-201ENST00000511745 1330 ntBASIC0.18□□□□□ -2.38
SCN3AQ9NY46 AL390237.1-201ENST00000404226 1415 ntBASIC0.17□□□□□ -2.38
SCN3AQ9NY46 ZNF204P-201ENST00000416749 2397 ntBASIC0.17□□□□□ -2.38
SCN3AQ9NY46 RNU6-227P-201ENST00000362865 103 ntBASIC0.17□□□□□ -2.38
SCN3AQ9NY46 RNU6-1327P-201ENST00000365302 105 ntBASIC0.17□□□□□ -2.38
SCN3AQ9NY46 RNU6-163P-201ENST00000384396 106 ntBASIC0.17□□□□□ -2.38
SCN3AQ9NY46 RNU6-933P-201ENST00000384424 107 ntBASIC0.17□□□□□ -2.38
SCN3AQ9NY46 AL034345.1-201ENST00000407768 123 ntBASIC0.17□□□□□ -2.38
SCN3AQ9NY46 SNORD111-201ENST00000408139 94 ntBASIC0.17□□□□□ -2.38
SCN3AQ9NY46 RNU6-195P-201ENST00000411352 109 ntBASIC0.17□□□□□ -2.38
SCN3AQ9NY46 MTND3P9-201ENST00000429526 346 ntBASIC0.17□□□□□ -2.38
SCN3AQ9NY46 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC0.17□□□□□ -2.38
SCN3AQ9NY46 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC0.17□□□□□ -2.38
SCN3AQ9NY46 RPL39P5-202ENST00000512505 151 ntBASIC0.17□□□□□ -2.38
SCN3AQ9NY46 MTND2P32-201ENST00000521584 1038 ntBASIC0.17□□□□□ -2.38
SCN3AQ9NY46 PRELID3BP2-201ENST00000605362 201 ntBASIC0.17□□□□□ -2.38
SCN3AQ9NY46 U2.17-201ENST00000611454 95 ntBASIC0.17□□□□□ -2.38
SCN3AQ9NY46 AL357075.2-201ENST00000614906 189 ntBASIC0.17□□□□□ -2.38
SCN3AQ9NY46 AL078595.3-201ENST00000623815 1166 ntBASIC0.17□□□□□ -2.38
SCN3AQ9NY46 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC0.16□□□□□ -2.38
SCN3AQ9NY46 RNU6-1127P-201ENST00000384580 107 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 RNA5SP109-201ENST00000391010 116 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 MRPL42P3-201ENST00000401492 326 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 AC104332.1-201ENST00000440471 797 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.16□□□□□ -2.38
SCN3AQ9NY46 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.16□□□□□ -2.38
SCN3AQ9NY46 MTCO3P8-201ENST00000453691 755 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 AP003461.1-201ENST00000528866 78 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 AC025423.5-201ENST00000550230 219 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC0.16□□□□□ -2.38
SCN3AQ9NY46 AC122133.1-201ENST00000613964 233 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 AC006435.5-201ENST00000624486 112 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 RNU6-1305P-201ENST00000364353 104 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 RNU4-28P-201ENST00000364739 141 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.16□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 187.8 ms