Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 RNU6-351P-201ENST00000516097 100 ntBASIC0.84□□□□□ -2.27
TREX1Q9NSU2 RNU6-344P-201ENST00000516635 111 ntBASIC0.84□□□□□ -2.27
TREX1Q9NSU2 CBX3P8-201ENST00000532412 525 ntBASIC0.84□□□□□ -2.27
TREX1Q9NSU2 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.84□□□□□ -2.27
TREX1Q9NSU2 AC022217.4-201ENST00000604389 163 ntBASIC0.84□□□□□ -2.27
TREX1Q9NSU2 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC0.84□□□□□ -2.27
TREX1Q9NSU2 MIR8054-201ENST00000620877 86 ntBASIC0.84□□□□□ -2.27
TREX1Q9NSU2 AC106754.2-201ENST00000623006 233 ntBASIC0.84□□□□□ -2.27
TREX1Q9NSU2 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
TREX1Q9NSU2 AC018630.2-201ENST00000534866 2403 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 SNORD114-2-201ENST00000363953 78 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 SNORD114-22-201ENST00000365423 72 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 RNU4-20P-201ENST00000365601 151 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 SNORA69-201ENST00000383895 132 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 RNU6-790P-201ENST00000384479 105 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 MIR489-201ENST00000384923 84 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 RNU6-440P-201ENST00000390882 105 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 EIF4E2P1-201ENST00000393781 255 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 AL590002.1-201ENST00000406554 418 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 CDK8P2-201ENST00000415020 547 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 AC245047.3-201ENST00000429428 127 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 AL353572.1-201ENST00000442490 417 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 MTND3P16-201ENST00000452205 344 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 RPL39P38-201ENST00000467018 153 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC0.83□□□□□ -2.28
TREX1Q9NSU2 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.83□□□□□ -2.28
TREX1Q9NSU2 SCARNA16.2-201ENST00000516520 172 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 SNORA70.22-201ENST00000517160 124 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 AC026371.1-201ENST00000551867 419 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 CPDP1-201ENST00000579660 283 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 SNORD11B-201ENST00000607707 90 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 AC063944.3-201ENST00000609969 533 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 SNORD3E-202ENST00000627253 216 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 U6.108-201ENST00000637764 58 ntBASIC0.83□□□□□ -2.28
TREX1Q9NSU2 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.83□□□□□ -2.28
TREX1Q9NSU2 Y_RNA.466-201ENST00000384294 113 ntBASIC0.82□□□□□ -2.28
TREX1Q9NSU2 MIR32-201ENST00000384965 70 ntBASIC0.82□□□□□ -2.28
TREX1Q9NSU2 MIR613-201ENST00000385248 95 ntBASIC0.82□□□□□ -2.28
TREX1Q9NSU2 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.82□□□□□ -2.28
TREX1Q9NSU2 RNU6-1208P-201ENST00000459588 107 ntBASIC0.82□□□□□ -2.28
TREX1Q9NSU2 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.82□□□□□ -2.28
TREX1Q9NSU2 AC091885.1-201ENST00000506658 268 ntBASIC0.82□□□□□ -2.28
TREX1Q9NSU2 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.82□□□□□ -2.28
TREX1Q9NSU2 RNU6-922P-201ENST00000516753 99 ntBASIC0.82□□□□□ -2.28
TREX1Q9NSU2 RNA5SP54-201ENST00000516951 92 ntBASIC0.82□□□□□ -2.28
TREX1Q9NSU2 RNA5SP454-201ENST00000517231 127 ntBASIC0.82□□□□□ -2.28
TREX1Q9NSU2 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.82□□□□□ -2.28
TREX1Q9NSU2 AC016957.1-201ENST00000534895 309 ntBASIC0.82□□□□□ -2.28
TREX1Q9NSU2 MIR4698-201ENST00000577795 80 ntBASIC0.82□□□□□ -2.28
TREX1Q9NSU2 AC008088.1-201ENST00000580993 280 ntBASIC0.82□□□□□ -2.28
TREX1Q9NSU2 AC211469.2-201ENST00000605461 205 ntBASIC0.82□□□□□ -2.28
TREX1Q9NSU2 DLEU2_1.1-201ENST00000612089 120 ntBASIC0.82□□□□□ -2.28
TREX1Q9NSU2 DLEU2_1.2-201ENST00000614667 120 ntBASIC0.82□□□□□ -2.28
TREX1Q9NSU2 AC073534.2-201ENST00000620377 381 ntBASIC0.82□□□□□ -2.28
TREX1Q9NSU2 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.82□□□□□ -2.28
TREX1Q9NSU2 AC078883.4-201ENST00000623218 367 ntBASIC0.82□□□□□ -2.28
TREX1Q9NSU2 AC008873.1-201ENST00000625051 138 ntBASIC0.82□□□□□ -2.28
TREX1Q9NSU2 SNORD87-201ENST00000364849 89 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 RNU1-36P-201ENST00000365130 165 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 Y_RNA.359-201ENST00000365498 102 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.81□□□□□ -2.28
TREX1Q9NSU2 MRPL42P3-201ENST00000401492 326 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 AL034345.1-201ENST00000407768 123 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.81□□□□□ -2.28
TREX1Q9NSU2 AC092447.3-201ENST00000426027 686 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC0.81□□□□□ -2.28
TREX1Q9NSU2 AL445305.1-201ENST00000432577 575 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 MTND4LP16-201ENST00000440828 295 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 MTCO1P19-201ENST00000443487 500 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC0.81□□□□□ -2.28
TREX1Q9NSU2 RNU6-261P-201ENST00000459506 102 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 AC083798.1-201ENST00000472671 131 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 AC092991.1-201ENST00000477176 376 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC0.81□□□□□ -2.28
TREX1Q9NSU2 SNORA25.14-201ENST00000516481 132 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 RNU6-113P-201ENST00000516653 101 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 RNU6-165P-201ENST00000517170 99 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC0.81□□□□□ -2.28
TREX1Q9NSU2 AC104383.1-201ENST00000530297 370 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.81□□□□□ -2.28
TREX1Q9NSU2 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.81□□□□□ -2.28
TREX1Q9NSU2 AL137100.2-201ENST00000555786 315 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC0.81□□□□□ -2.28
TREX1Q9NSU2 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.81□□□□□ -2.28
TREX1Q9NSU2 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.81□□□□□ -2.28
TREX1Q9NSU2 AC100830.2-201ENST00000581636 240 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 MIR151B-201ENST00000584249 96 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 AC017083.3-201ENST00000609955 700 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 RMST_2.1-201ENST00000617263 136 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 MIR6734-201ENST00000621166 68 ntBASIC0.81□□□□□ -2.28
TREX1Q9NSU2 RNU6-1266P-201ENST00000362794 105 ntBASIC0.8□□□□□ -2.28
TREX1Q9NSU2 Y_RNA.112-201ENST00000363250 102 ntBASIC0.8□□□□□ -2.28
TREX1Q9NSU2 RNU6-727P-201ENST00000363592 107 ntBASIC0.8□□□□□ -2.28
TREX1Q9NSU2 RNU6-1322P-201ENST00000364309 107 ntBASIC0.8□□□□□ -2.28
TREX1Q9NSU2 Y_RNA.553-201ENST00000384670 102 ntBASIC0.8□□□□□ -2.28
TREX1Q9NSU2 RNU11-5P-201ENST00000391216 129 ntBASIC0.8□□□□□ -2.28
TREX1Q9NSU2 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.8□□□□□ -2.28
TREX1Q9NSU2 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.8□□□□□ -2.28
TREX1Q9NSU2 RNA5SP504-201ENST00000410676 117 ntBASIC0.8□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms