Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RNA5SP274-201ENST00000410484 108 ntBASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 RNU6-57P-201ENST00000411348 103 ntBASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 AC009238.1-201ENST00000442165 424 ntBASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 UBBP3-201ENST00000445497 241 ntBASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 AC104389.3-201ENST00000445629 235 ntBASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 AC009237.6-201ENST00000446969 424 ntBASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 RNU6-498P-201ENST00000459468 107 ntBASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 RN7SL75P-201ENST00000461926 281 ntBASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 AC091959.1-201ENST00000495857 238 ntBASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 RNU6-667P-201ENST00000517186 102 ntBASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 AL162424.1-201ENST00000602325 221 ntBASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 AL035425.3-201ENST00000564206 4996 ntBASIC2.98□□□□□ -1.93
TRIM39Q9HCM9 SNORD115-30-201ENST00000364117 82 ntBASIC2.97□□□□□ -1.93
TRIM39Q9HCM9 SNORD56.5-201ENST00000364281 72 ntBASIC2.97□□□□□ -1.93
TRIM39Q9HCM9 Y_RNA.243-201ENST00000364481 109 ntBASIC2.97□□□□□ -1.93
TRIM39Q9HCM9 Y_RNA.329-201ENST00000365209 107 ntBASIC2.97□□□□□ -1.93
TRIM39Q9HCM9 SNORA25B-201ENST00000365507 128 ntBASIC2.97□□□□□ -1.93
TRIM39Q9HCM9 AL031003.1-201ENST00000404229 172 ntBASIC2.97□□□□□ -1.93
TRIM39Q9HCM9 AL139095.1-201ENST00000404326 391 ntBASIC2.97□□□□□ -1.93
TRIM39Q9HCM9 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.97□□□□□ -1.93
TRIM39Q9HCM9 RNU6-221P-201ENST00000459541 99 ntBASIC2.97□□□□□ -1.93
TRIM39Q9HCM9 SNORA4.4-201ENST00000515921 135 ntBASIC2.97□□□□□ -1.93
TRIM39Q9HCM9 SNORA27.4-201ENST00000516650 95 ntBASIC2.97□□□□□ -1.93
TRIM39Q9HCM9 RNU6-111P-201ENST00000517179 105 ntBASIC2.97□□□□□ -1.93
TRIM39Q9HCM9 AC010900.2-201ENST00000604508 210 ntBASIC2.97□□□□□ -1.93
TRIM39Q9HCM9 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.97□□□□□ -1.93
TRIM39Q9HCM9 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 AC073325.2-201ENST00000339545 159 ntBASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 UBE2WP1-201ENST00000362030 340 ntBASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 Y_RNA.65-201ENST00000362846 100 ntBASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 RNU6-525P-201ENST00000363685 104 ntBASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 Y_RNA.275-201ENST00000364726 110 ntBASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 SNORA26.7-201ENST00000391288 122 ntBASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 AC123900.1-201ENST00000420390 96 ntBASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 AL139109.1-201ENST00000455491 297 ntBASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 AC093259.1-201ENST00000509755 300 ntBASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 RNU6-991P-201ENST00000516168 107 ntBASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 RNU6-436P-201ENST00000516171 114 ntBASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 RNU6-966P-201ENST00000516479 104 ntBASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 AC022080.3-201ENST00000544433 482 ntBASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 DEFB117-201ENST00000602356 141 ntBASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 AC013412.1-201ENST00000610687 192 ntBASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 U6.115-201ENST00000636045 103 ntBASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
TRIM39Q9HCM9 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.95□□□□□ -1.94
TRIM39Q9HCM9 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.95□□□□□ -1.94
TRIM39Q9HCM9 AC009487.2-201ENST00000420969 6821 ntBASIC2.95□□□□□ -1.94
TRIM39Q9HCM9 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.95□□□□□ -1.94
TRIM39Q9HCM9 RNU4-80P-201ENST00000363200 141 ntBASIC2.95□□□□□ -1.94
TRIM39Q9HCM9 RNU6-338P-201ENST00000383888 105 ntBASIC2.95□□□□□ -1.94
TRIM39Q9HCM9 RNU6-418P-201ENST00000384035 107 ntBASIC2.95□□□□□ -1.94
TRIM39Q9HCM9 SRIP3-201ENST00000413200 219 ntBASIC2.95□□□□□ -1.94
TRIM39Q9HCM9 AC022018.1-201ENST00000430685 241 ntBASIC2.95□□□□□ -1.94
TRIM39Q9HCM9 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.95□□□□□ -1.94
TRIM39Q9HCM9 AL357134.1-201ENST00000445848 426 ntBASIC2.95□□□□□ -1.94
TRIM39Q9HCM9 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.95□□□□□ -1.94
TRIM39Q9HCM9 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.95□□□□□ -1.94
TRIM39Q9HCM9 AC025754.2-201ENST00000606491 432 ntBASIC2.95□□□□□ -1.94
TRIM39Q9HCM9 AC093732.2-201ENST00000607950 274 ntBASIC2.95□□□□□ -1.94
TRIM39Q9HCM9 AC007318.2-201ENST00000620999 243 ntBASIC2.95□□□□□ -1.94
TRIM39Q9HCM9 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.95□□□□□ -1.94
TRIM39Q9HCM9 RNU6-271P-201ENST00000363858 105 ntBASIC2.94□□□□□ -1.94
TRIM39Q9HCM9 Y_RNA.332-201ENST00000365271 113 ntBASIC2.94□□□□□ -1.94
TRIM39Q9HCM9 SNORD14D-201ENST00000384390 87 ntBASIC2.94□□□□□ -1.94
TRIM39Q9HCM9 RNU6-851P-201ENST00000384565 107 ntBASIC2.94□□□□□ -1.94
TRIM39Q9HCM9 SNORA46-201ENST00000384762 135 ntBASIC2.94□□□□□ -1.94
TRIM39Q9HCM9 SNORD58.1-201ENST00000391313 66 ntBASIC2.94□□□□□ -1.94
TRIM39Q9HCM9 Y_RNA.590-201ENST00000410140 107 ntBASIC2.94□□□□□ -1.94
TRIM39Q9HCM9 Z92545.1-201ENST00000411782 234 ntBASIC2.94□□□□□ -1.94
TRIM39Q9HCM9 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.94□□□□□ -1.94
TRIM39Q9HCM9 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.94□□□□□ -1.94
TRIM39Q9HCM9 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.94□□□□□ -1.94
TRIM39Q9HCM9 AC016717.1-201ENST00000448918 286 ntBASIC2.94□□□□□ -1.94
TRIM39Q9HCM9 RNU6-191P-201ENST00000516295 94 ntBASIC2.94□□□□□ -1.94
TRIM39Q9HCM9 Y_RNA.679-201ENST00000516416 91 ntBASIC2.94□□□□□ -1.94
TRIM39Q9HCM9 AC107016.2-201ENST00000547968 190 ntBASIC2.94□□□□□ -1.94
TRIM39Q9HCM9 PRELID2P1-201ENST00000552837 301 ntBASIC2.94□□□□□ -1.94
TRIM39Q9HCM9 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.94□□□□□ -1.94
TRIM39Q9HCM9 MIR3145-201ENST00000580727 82 ntBASIC2.94□□□□□ -1.94
TRIM39Q9HCM9 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
TRIM39Q9HCM9 AP006437.1-201ENST00000641440 3685 ntBASIC2.94□□□□□ -1.94
TRIM39Q9HCM9 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.93□□□□□ -1.94
TRIM39Q9HCM9 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
TRIM39Q9HCM9 SNORD114-7-201ENST00000362520 77 ntBASIC2.93□□□□□ -1.94
TRIM39Q9HCM9 SNORA44-201ENST00000384584 132 ntBASIC2.93□□□□□ -1.94
TRIM39Q9HCM9 Y_RNA.539-201ENST00000384635 107 ntBASIC2.93□□□□□ -1.94
TRIM39Q9HCM9 MIR592-201ENST00000384959 97 ntBASIC2.93□□□□□ -1.94
TRIM39Q9HCM9 RNU2-48P-201ENST00000410694 191 ntBASIC2.93□□□□□ -1.94
TRIM39Q9HCM9 RNU2-61P-201ENST00000411069 191 ntBASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms