Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 Y_RNA.577-201ENST00000384794 101 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 MIR597-201ENST00000384968 97 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 AL627390.1-201ENST00000396055 340 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.65□□□□□ -2.15
LIME1Q9H400 AF228730.4-201ENST00000421457 183 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 AC096920.1-201ENST00000423991 241 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 EIF1P2-201ENST00000428233 350 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 AL353689.1-201ENST00000438895 199 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 NDUFB4P10-201ENST00000452541 359 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.65□□□□□ -2.15
LIME1Q9H400 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 Y_RNA.632-201ENST00000459189 102 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 RNU6-498P-201ENST00000459468 107 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 SNORD19B-201ENST00000459623 84 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 MTND3P22-201ENST00000510932 243 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 TRMT112P2-201ENST00000512910 132 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 RNA5SP445-201ENST00000515889 115 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 RNU4ATAC7P-201ENST00000516280 125 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 SNORA25.14-201ENST00000516481 132 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 AC093027.1-201ENST00000546698 429 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.65□□□□□ -2.15
LIME1Q9H400 AC125232.2-201ENST00000592457 143 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 AL117336.2-201ENST00000602435 335 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 AL109918.3-201ENST00000603072 338 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 AC080078.3-201ENST00000605407 463 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 AC130454.1-201ENST00000622948 401 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 AL008636.1-201ENST00000625038 1018 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 AC068205.3-201ENST00000636385 468 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 AC112487.2-201ENST00000637950 304 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.65□□□□□ -2.15
LIME1Q9H400 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
LIME1Q9H400 AC008555.8-201ENST00000623602 2168 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 Y_RNA.259-201ENST00000364619 101 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 Y_RNA.384-201ENST00000383909 102 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 RNU6-281P-201ENST00000384212 103 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 RNU6-793P-201ENST00000384233 104 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 RNU6-541P-201ENST00000384709 110 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 MIR17-201ENST00000385012 84 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 MIR559-201ENST00000385188 96 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 MT-TD-201ENST00000387419 68 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 SNORA48.1-201ENST00000390879 135 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 RNU2-40P-201ENST00000410833 196 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 RNA5SP489-201ENST00000410986 109 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 AP1B1P2-201ENST00000416196 106 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 AC007098.1-201ENST00000420122 367 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 AC092473.1-201ENST00000441098 221 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 AC245517.4-201ENST00000448601 281 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 RPL23AP3-201ENST00000453844 468 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.64□□□□□ -2.15
LIME1Q9H400 AC114982.1-201ENST00000469402 321 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.64□□□□□ -2.15
LIME1Q9H400 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.64□□□□□ -2.15
LIME1Q9H400 AK6P2-201ENST00000549020 471 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 MIR4753-201ENST00000585119 83 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.64□□□□□ -2.15
LIME1Q9H400 AL353149.1-201ENST00000610667 244 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 AC133104.2-201ENST00000615272 193 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.64□□□□□ -2.15
LIME1Q9H400 MTND4LP32-201ENST00000636111 270 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
LIME1Q9H400 ZNF355P-201ENST00000427301 3216 ntBASIC1.64□□□□□ -2.15
LIME1Q9H400 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.63□□□□□ -2.15
LIME1Q9H400 MIR499A-201ENST00000384903 122 ntBASIC1.63□□□□□ -2.15
LIME1Q9H400 AL512604.1-201ENST00000404812 257 ntBASIC1.63□□□□□ -2.15
LIME1Q9H400 AL445305.1-201ENST00000432577 575 ntBASIC1.63□□□□□ -2.15
LIME1Q9H400 RN7SL274P-201ENST00000492268 272 ntBASIC1.63□□□□□ -2.15
LIME1Q9H400 RNU6-120P-201ENST00000516077 103 ntBASIC1.63□□□□□ -2.15
LIME1Q9H400 RAB11AP2-201ENST00000545905 639 ntBASIC1.63□□□□□ -2.15
LIME1Q9H400 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.63□□□□□ -2.15
LIME1Q9H400 MIR5695-201ENST00000579717 85 ntBASIC1.63□□□□□ -2.15
LIME1Q9H400 MIR4303-201ENST00000581299 66 ntBASIC1.63□□□□□ -2.15
LIME1Q9H400 AC005786.1-201ENST00000588553 154 ntBASIC1.63□□□□□ -2.15
LIME1Q9H400 AL359821.1-201ENST00000605519 182 ntBASIC1.63□□□□□ -2.15
LIME1Q9H400 Y_RNA.804-201ENST00000615262 101 ntBASIC1.63□□□□□ -2.15
LIME1Q9H400 AL162373.1-201ENST00000620433 407 ntBASIC1.63□□□□□ -2.15
LIME1Q9H400 uc_338.20-201ENST00000621563 178 ntBASIC1.63□□□□□ -2.15
LIME1Q9H400 AC084768.2-201ENST00000622736 221 ntBASIC1.63□□□□□ -2.15
LIME1Q9H400 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
LIME1Q9H400 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.63□□□□□ -2.15
LIME1Q9H400 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
LIME1Q9H400 MTND5P16-201ENST00000460269 1703 ntBASIC1.63□□□□□ -2.15
LIME1Q9H400 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.62□□□□□ -2.15
LIME1Q9H400 RNU6-99P-201ENST00000364721 107 ntBASIC1.62□□□□□ -2.15
LIME1Q9H400 Y_RNA.356-201ENST00000365475 113 ntBASIC1.62□□□□□ -2.15
LIME1Q9H400 RNU6-1040P-201ENST00000383974 107 ntBASIC1.62□□□□□ -2.15
LIME1Q9H400 SNORA8-201ENST00000384574 139 ntBASIC1.62□□□□□ -2.15
LIME1Q9H400 MIR9-3-201ENST00000385084 90 ntBASIC1.62□□□□□ -2.15
LIME1Q9H400 MIR676-201ENST00000390702 67 ntBASIC1.62□□□□□ -2.15
LIME1Q9H400 RNU6-1304P-201ENST00000411374 106 ntBASIC1.62□□□□□ -2.15
LIME1Q9H400 AL158823.1-201ENST00000418441 478 ntBASIC1.62□□□□□ -2.15
LIME1Q9H400 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.62□□□□□ -2.15
LIME1Q9H400 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.62□□□□□ -2.15
LIME1Q9H400 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.62□□□□□ -2.15
LIME1Q9H400 RPL36AP21-201ENST00000490372 323 ntBASIC1.62□□□□□ -2.15
LIME1Q9H400 AC022493.2-201ENST00000506122 481 ntBASIC1.62□□□□□ -2.15
LIME1Q9H400 RNU6-470P-201ENST00000515954 104 ntBASIC1.62□□□□□ -2.15
LIME1Q9H400 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
LIME1Q9H400 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.62□□□□□ -2.15
LIME1Q9H400 CYP2C61P-201ENST00000604072 290 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 126.8 ms