Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 MIR549A-201ENST00000385268 96 ntBASIC1.71□□□□□ -2.14
CCDC28BQ9BUN5 MIR1283-1-201ENST00000408494 87 ntBASIC1.71□□□□□ -2.14
CCDC28BQ9BUN5 Y_RNA.605-201ENST00000410577 105 ntBASIC1.71□□□□□ -2.14
CCDC28BQ9BUN5 AC004866.1-201ENST00000411748 78 ntBASIC1.71□□□□□ -2.14
CCDC28BQ9BUN5 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.71□□□□□ -2.14
CCDC28BQ9BUN5 NDUFB4P10-201ENST00000452541 359 ntBASIC1.71□□□□□ -2.14
CCDC28BQ9BUN5 AC114982.1-201ENST00000469402 321 ntBASIC1.71□□□□□ -2.14
CCDC28BQ9BUN5 RNU6-991P-201ENST00000516168 107 ntBASIC1.71□□□□□ -2.14
CCDC28BQ9BUN5 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.71□□□□□ -2.14
CCDC28BQ9BUN5 CBX3P4-201ENST00000538909 354 ntBASIC1.71□□□□□ -2.14
CCDC28BQ9BUN5 AP002770.2-201ENST00000543613 532 ntBASIC1.71□□□□□ -2.14
CCDC28BQ9BUN5 AC093023.1-201ENST00000547375 507 ntBASIC1.71□□□□□ -2.14
CCDC28BQ9BUN5 RRN3P3-201ENST00000549207 578 ntBASIC1.71□□□□□ -2.14
CCDC28BQ9BUN5 HSBP1P1-201ENST00000555205 166 ntBASIC1.71□□□□□ -2.14
CCDC28BQ9BUN5 AC233702.2-202ENST00000562547 291 ntBASIC1.71□□□□□ -2.14
CCDC28BQ9BUN5 AC125232.2-201ENST00000592457 143 ntBASIC1.71□□□□□ -2.14
CCDC28BQ9BUN5 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC1.71□□□□□ -2.14
CCDC28BQ9BUN5 AC134503.1-201ENST00000633048 54 ntBASIC1.71□□□□□ -2.14
CCDC28BQ9BUN5 AC068205.3-201ENST00000636385 468 ntBASIC1.71□□□□□ -2.14
CCDC28BQ9BUN5 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC1.71□□□□□ -2.14
CCDC28BQ9BUN5 MIR369-201ENST00000362155 70 ntBASIC1.7□□□□□ -2.14
CCDC28BQ9BUN5 Y_RNA.128-201ENST00000363391 112 ntBASIC1.7□□□□□ -2.14
CCDC28BQ9BUN5 RNA5SP363-201ENST00000365072 115 ntBASIC1.7□□□□□ -2.14
CCDC28BQ9BUN5 RNU6-1145P-201ENST00000384246 107 ntBASIC1.7□□□□□ -2.14
CCDC28BQ9BUN5 SNORA67.2-201ENST00000384300 149 ntBASIC1.7□□□□□ -2.14
CCDC28BQ9BUN5 Y_RNA.496-201ENST00000384444 101 ntBASIC1.7□□□□□ -2.14
CCDC28BQ9BUN5 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.7□□□□□ -2.14
CCDC28BQ9BUN5 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC1.7□□□□□ -2.14
CCDC28BQ9BUN5 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.7□□□□□ -2.14
CCDC28BQ9BUN5 AC007677.1-201ENST00000445757 515 ntBASIC1.7□□□□□ -2.14
CCDC28BQ9BUN5 AC074290.1-201ENST00000448883 135 ntBASIC1.7□□□□□ -2.14
CCDC28BQ9BUN5 Y_RNA.631-201ENST00000459607 101 ntBASIC1.7□□□□□ -2.14
CCDC28BQ9BUN5 Y_RNA.683-201ENST00000516508 93 ntBASIC1.7□□□□□ -2.14
CCDC28BQ9BUN5 RN7SKP49-201ENST00000516675 260 ntBASIC1.7□□□□□ -2.14
CCDC28BQ9BUN5 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC1.7□□□□□ -2.14
CCDC28BQ9BUN5 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.7□□□□□ -2.14
CCDC28BQ9BUN5 MIR4753-201ENST00000585119 83 ntBASIC1.7□□□□□ -2.14
CCDC28BQ9BUN5 VN1R91P-201ENST00000594377 169 ntBASIC1.7□□□□□ -2.14
CCDC28BQ9BUN5 AL031274.2-201ENST00000599419 203 ntBASIC1.7□□□□□ -2.14
CCDC28BQ9BUN5 AC138305.3-201ENST00000624988 240 ntBASIC1.7□□□□□ -2.14
CCDC28BQ9BUN5 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.7□□□□□ -2.14
CCDC28BQ9BUN5 RNA5SP276-201ENST00000362580 94 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 Y_RNA.39-201ENST00000362620 98 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 RNU6-1301P-201ENST00000362724 104 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 Y_RNA.132-201ENST00000363421 102 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 Y_RNA.445-201ENST00000384168 102 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 MIR329-1-201ENST00000385028 80 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 MIR1262-201ENST00000408276 93 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 MTCO3P19-201ENST00000415864 321 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 AL158823.1-201ENST00000418441 478 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 MTCO2P12-201ENST00000427426 682 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 U8.22-201ENST00000459141 133 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 AP001486.1-201ENST00000463339 476 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 AC091179.3-201ENST00000474761 144 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 Y_RNA.661-201ENST00000516003 99 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 RNU6-475P-201ENST00000516073 104 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 RNU2-34P-201ENST00000516534 121 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 Y_RNA.701-201ENST00000516812 110 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 AC022868.1-201ENST00000517767 391 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 AL442163.3-201ENST00000554110 156 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 AC092447.9-201ENST00000603395 144 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 U2.1-201ENST00000618978 145 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 MIR4272-201ENST00000635924 64 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 MTND5P35-201ENST00000557537 1720 ntBASIC1.69□□□□□ -2.14
CCDC28BQ9BUN5 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 RNU6-545P-201ENST00000362681 104 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 Y_RNA.111-201ENST00000363248 100 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 RNU6-879P-201ENST00000364328 108 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 Y_RNA.813-201ENST00000364639 102 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 RNU6-975P-201ENST00000384296 105 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 RNY3P4-201ENST00000384428 101 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 RNU6-160P-201ENST00000384591 107 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 MIR628-201ENST00000385229 95 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 AL033519.2-201ENST00000403958 392 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 RNA5SP425-201ENST00000410336 112 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 Y_RNA.595-201ENST00000410403 105 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 RN7SKP223-201ENST00000410582 62 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 RNU6-1001P-201ENST00000411265 100 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 Z98742.3-201ENST00000418637 326 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 DPH3P2-201ENST00000422618 250 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 AL445305.1-201ENST00000432577 575 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 AL357134.1-201ENST00000445848 426 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 RPL23AP6-201ENST00000446637 472 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 RNU1-131P-201ENST00000458943 161 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 HMGN2P9-201ENST00000476875 229 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 AC067942.3-201ENST00000512025 362 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 SNORA40.14-201ENST00000516543 86 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 GNAI2P1-201ENST00000541815 315 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 AL773524.1-201ENST00000614065 229 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.68□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms