Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNA5SP320-201ENST00000516263 124 ntBASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 AP000867.2-201ENST00000532468 320 ntBASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 AP002001.1-203ENST00000534002 267 ntBASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 AL034555.1-201ENST00000604816 211 ntBASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 AL008718.3-201ENST00000610217 321 ntBASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 PCGEM1.1-201ENST00000613431 131 ntBASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 AL138880.2-201ENST00000616214 239 ntBASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 AL590808.1-201ENST00000618696 141 ntBASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 MIR7153-201ENST00000637758 57 ntBASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.5□□□□□ -1.85
USHBP1Q8N6Y0 RNA5SP432-201ENST00000362480 116 ntBASIC3.5□□□□□ -1.85
USHBP1Q8N6Y0 SNORD114-19-201ENST00000363072 75 ntBASIC3.5□□□□□ -1.85
USHBP1Q8N6Y0 RNU6-312P-201ENST00000364629 107 ntBASIC3.5□□□□□ -1.85
USHBP1Q8N6Y0 Y_RNA.329-201ENST00000365209 107 ntBASIC3.5□□□□□ -1.85
USHBP1Q8N6Y0 RNU6-1081P-201ENST00000384537 107 ntBASIC3.5□□□□□ -1.85
USHBP1Q8N6Y0 MIR591-201ENST00000385290 95 ntBASIC3.5□□□□□ -1.85
USHBP1Q8N6Y0 RPL21P3-201ENST00000395517 478 ntBASIC3.5□□□□□ -1.85
USHBP1Q8N6Y0 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.5□□□□□ -1.85
USHBP1Q8N6Y0 HMGN2P20-201ENST00000437531 273 ntBASIC3.5□□□□□ -1.85
USHBP1Q8N6Y0 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.5□□□□□ -1.85
USHBP1Q8N6Y0 AC146507.2-201ENST00000460608 476 ntBASIC3.5□□□□□ -1.85
USHBP1Q8N6Y0 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
USHBP1Q8N6Y0 RNU6-107P-201ENST00000516643 102 ntBASIC3.5□□□□□ -1.85
USHBP1Q8N6Y0 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.5□□□□□ -1.85
USHBP1Q8N6Y0 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
USHBP1Q8N6Y0 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 MAPK10-362ENST00000641864 4484 ntBASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 MIR26A1-201ENST00000362205 77 ntBASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 Y_RNA.7-201ENST00000362352 102 ntBASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 Y_RNA.272-201ENST00000364696 102 ntBASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 RNA5SP252-201ENST00000391131 119 ntBASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 RNA5SP201-201ENST00000410316 124 ntBASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 AC010099.1-201ENST00000455434 375 ntBASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 snoU13.14-201ENST00000459372 104 ntBASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 SNORA31.1-201ENST00000515993 133 ntBASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 RNU6-436P-201ENST00000516171 114 ntBASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 SNORA31.5-201ENST00000516190 133 ntBASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 RNU2-12P-201ENST00000517216 168 ntBASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 SUMO2P18-201ENST00000518873 252 ntBASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 EIF4A1P12-201ENST00000551910 141 ntBASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 AC009127.3-201ENST00000570531 403 ntBASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 SNORD53-201ENST00000579969 78 ntBASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 MIR4635-201ENST00000583759 79 ntBASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 MTND1P7-201ENST00000632801 297 ntBASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
USHBP1Q8N6Y0 RNU6-324P-201ENST00000363957 106 ntBASIC3.48□□□□□ -1.85
USHBP1Q8N6Y0 Y_RNA.238-201ENST00000364441 102 ntBASIC3.48□□□□□ -1.85
USHBP1Q8N6Y0 RNU6-1264P-201ENST00000383891 107 ntBASIC3.48□□□□□ -1.85
USHBP1Q8N6Y0 SNORA3.2-201ENST00000408221 125 ntBASIC3.48□□□□□ -1.85
USHBP1Q8N6Y0 U3.40-201ENST00000408706 208 ntBASIC3.48□□□□□ -1.85
USHBP1Q8N6Y0 RNA5SP293-201ENST00000410527 113 ntBASIC3.48□□□□□ -1.85
USHBP1Q8N6Y0 Y_RNA.637-201ENST00000459424 114 ntBASIC3.48□□□□□ -1.85
USHBP1Q8N6Y0 RNU7-23P-201ENST00000459465 62 ntBASIC3.48□□□□□ -1.85
USHBP1Q8N6Y0 RPS27P29-201ENST00000463110 252 ntBASIC3.48□□□□□ -1.85
USHBP1Q8N6Y0 AP002884.2-201ENST00000471647 395 ntBASIC3.48□□□□□ -1.85
USHBP1Q8N6Y0 RNU6-344P-201ENST00000516635 111 ntBASIC3.48□□□□□ -1.85
USHBP1Q8N6Y0 AC068657.1-201ENST00000520807 306 ntBASIC3.48□□□□□ -1.85
USHBP1Q8N6Y0 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.48□□□□□ -1.85
USHBP1Q8N6Y0 TCL6_2.1-201ENST00000615162 119 ntBASIC3.48□□□□□ -1.85
USHBP1Q8N6Y0 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.48□□□□□ -1.85
USHBP1Q8N6Y0 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
USHBP1Q8N6Y0 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
USHBP1Q8N6Y0 AC010889.1-201ENST00000566193 2666 ntBASIC3.47□□□□□ -1.85
USHBP1Q8N6Y0 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.47□□□□□ -1.85
USHBP1Q8N6Y0 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
USHBP1Q8N6Y0 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.47□□□□□ -1.85
USHBP1Q8N6Y0 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
USHBP1Q8N6Y0 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.47□□□□□ -1.85
USHBP1Q8N6Y0 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
USHBP1Q8N6Y0 U3.9-201ENST00000363823 204 ntBASIC3.47□□□□□ -1.85
USHBP1Q8N6Y0 RNU6-805P-201ENST00000365643 106 ntBASIC3.47□□□□□ -1.85
USHBP1Q8N6Y0 Y_RNA.415-201ENST00000384012 112 ntBASIC3.47□□□□□ -1.85
USHBP1Q8N6Y0 RNU6ATAC19P-201ENST00000408096 110 ntBASIC3.47□□□□□ -1.85
USHBP1Q8N6Y0 AL121890.1-201ENST00000435457 205 ntBASIC3.47□□□□□ -1.85
USHBP1Q8N6Y0 CARD18-203ENST00000532895 422 ntTSL 2 BASIC3.47□□□□□ -1.85
USHBP1Q8N6Y0 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC3.47□□□□□ -1.85
USHBP1Q8N6Y0 SNORD11B-201ENST00000607707 90 ntBASIC3.47□□□□□ -1.85
USHBP1Q8N6Y0 AC064859.1-201ENST00000624741 174 ntBASIC3.47□□□□□ -1.85
USHBP1Q8N6Y0 MAPK10-322ENST00000641485 4530 ntBASIC3.47□□□□□ -1.85
USHBP1Q8N6Y0 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.47□□□□□ -1.85
USHBP1Q8N6Y0 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.46□□□□□ -1.86
USHBP1Q8N6Y0 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
USHBP1Q8N6Y0 RNU4-15P-201ENST00000362613 141 ntBASIC3.46□□□□□ -1.86
USHBP1Q8N6Y0 Y_RNA.40-201ENST00000362645 93 ntBASIC3.46□□□□□ -1.86
USHBP1Q8N6Y0 Y_RNA.121-201ENST00000363309 113 ntBASIC3.46□□□□□ -1.86
USHBP1Q8N6Y0 RNU6-454P-201ENST00000364292 107 ntBASIC3.46□□□□□ -1.86
USHBP1Q8N6Y0 RNU6-198P-201ENST00000384258 104 ntBASIC3.46□□□□□ -1.86
USHBP1Q8N6Y0 MIR147B-201ENST00000390185 80 ntBASIC3.46□□□□□ -1.86
USHBP1Q8N6Y0 RNU5E-9P-201ENST00000411164 104 ntBASIC3.46□□□□□ -1.86
USHBP1Q8N6Y0 AIMP1P2-201ENST00000425294 312 ntBASIC3.46□□□□□ -1.86
USHBP1Q8N6Y0 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms