Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 snoZ196.1-201ENST00000625269 89 ntBASIC1.36□□□□□ -2.19
SKA3Q8IX90 AC068205.3-201ENST00000636385 468 ntBASIC1.36□□□□□ -2.19
SKA3Q8IX90 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.35□□□□□ -2.19
SKA3Q8IX90 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.35□□□□□ -2.19
SKA3Q8IX90 MIR520A-201ENST00000384862 85 ntBASIC1.35□□□□□ -2.19
SKA3Q8IX90 MIR10B-201ENST00000385011 110 ntBASIC1.35□□□□□ -2.19
SKA3Q8IX90 RPL37P10-201ENST00000412884 288 ntBASIC1.35□□□□□ -2.19
SKA3Q8IX90 AC016909.1-201ENST00000415916 166 ntBASIC1.35□□□□□ -2.19
SKA3Q8IX90 AC007098.1-201ENST00000420122 367 ntBASIC1.35□□□□□ -2.19
SKA3Q8IX90 HMGN2P34-201ENST00000437647 269 ntBASIC1.35□□□□□ -2.19
SKA3Q8IX90 RNU7-30P-201ENST00000516835 62 ntBASIC1.35□□□□□ -2.19
SKA3Q8IX90 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.35□□□□□ -2.19
SKA3Q8IX90 BX248123.2-201ENST00000606318 124 ntBASIC1.35□□□□□ -2.19
SKA3Q8IX90 AC009229.3-201ENST00000608056 282 ntBASIC1.35□□□□□ -2.19
SKA3Q8IX90 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.35□□□□□ -2.19
SKA3Q8IX90 MIR7974-201ENST00000615835 79 ntBASIC1.35□□□□□ -2.19
SKA3Q8IX90 MIR338-201ENST00000636369 67 ntBASIC1.35□□□□□ -2.19
SKA3Q8IX90 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
SKA3Q8IX90 AP000648.3-201ENST00000623539 4507 ntBASIC1.35□□□□□ -2.19
SKA3Q8IX90 MIR424-201ENST00000362227 98 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 Y_RNA.2-201ENST00000362330 96 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 RNU1-62P-201ENST00000362599 164 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 Y_RNA.88-201ENST00000363029 99 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 SNORA33-201ENST00000363664 130 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 Y_RNA.279-201ENST00000364763 95 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 Y_RNA.339-201ENST00000365325 102 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 Y_RNA.415-201ENST00000384012 112 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 RNU6-767P-201ENST00000384132 107 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 RNU6-793P-201ENST00000384233 104 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 MIR1323-201ENST00000408090 73 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 MIR1304-201ENST00000408243 91 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 RNU6-1050P-201ENST00000410388 107 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.34□□□□□ -2.19
SKA3Q8IX90 CST2P1-201ENST00000425770 87 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 USP9YP16-201ENST00000430287 407 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 AL353997.1-201ENST00000432936 108 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 USP9YP23-201ENST00000455085 407 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.34□□□□□ -2.19
SKA3Q8IX90 MTND4P17-201ENST00000470444 350 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 RPL7P42-201ENST00000481005 679 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 AC108210.2-201ENST00000503681 201 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 AC046134.1-201ENST00000514454 666 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 RNU6-1114P-201ENST00000516022 107 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 Y_RNA.708-201ENST00000516950 96 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 RNA5SP437-201ENST00000517249 129 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 SNORD53B-201ENST00000577887 78 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 AC104984.5-201ENST00000586878 94 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 AC100812.1-201ENST00000607622 580 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 AC005014.2-201ENST00000607795 599 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.34□□□□□ -2.19
SKA3Q8IX90 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.34□□□□□ -2.19
SKA3Q8IX90 AC010615.1-201ENST00000594254 1764 ntBASIC1.34□□□□□ -2.2
SKA3Q8IX90 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
SKA3Q8IX90 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.33□□□□□ -2.2
SKA3Q8IX90 RNU6-1019P-201ENST00000364424 107 ntBASIC1.33□□□□□ -2.2
SKA3Q8IX90 MIR30A-201ENST00000385092 71 ntBASIC1.33□□□□□ -2.2
SKA3Q8IX90 MIR517C-201ENST00000385103 95 ntBASIC1.33□□□□□ -2.2
SKA3Q8IX90 MIR548B-201ENST00000385247 97 ntBASIC1.33□□□□□ -2.2
SKA3Q8IX90 MIR1253-201ENST00000408273 105 ntBASIC1.33□□□□□ -2.2
SKA3Q8IX90 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.33□□□□□ -2.2
SKA3Q8IX90 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.33□□□□□ -2.2
SKA3Q8IX90 MTND3P10-201ENST00000450967 341 ntBASIC1.33□□□□□ -2.2
SKA3Q8IX90 AC023790.1-201ENST00000482174 347 ntBASIC1.33□□□□□ -2.2
SKA3Q8IX90 AC103851.1-201ENST00000506833 274 ntBASIC1.33□□□□□ -2.2
SKA3Q8IX90 AC025465.3-201ENST00000510570 311 ntBASIC1.33□□□□□ -2.2
SKA3Q8IX90 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.33□□□□□ -2.2
SKA3Q8IX90 MIR3198-2-201ENST00000577868 80 ntBASIC1.33□□□□□ -2.2
SKA3Q8IX90 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.33□□□□□ -2.2
SKA3Q8IX90 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
SKA3Q8IX90 MTND5P10-201ENST00000603719 1809 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 RNU6-845P-201ENST00000362578 103 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 Y_RNA.106-201ENST00000363189 100 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 RNU5F-3P-201ENST00000363767 117 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 RNU1-42P-201ENST00000364033 160 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 RNU6-60P-201ENST00000364792 103 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 SNORA72.2-201ENST00000365028 127 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 Y_RNA.482-201ENST00000384377 111 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 RNU6-417P-201ENST00000384712 107 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 MT-TL1-201ENST00000386347 75 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
SKA3Q8IX90 SNORA67.5-201ENST00000391036 107 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 RNU1-139P-201ENST00000391307 165 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
SKA3Q8IX90 RNU2-7P-201ENST00000410794 178 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 AC008134.1-201ENST00000420943 193 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 HSPE1P9-201ENST00000440046 311 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 RNU6-221P-201ENST00000459541 99 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 AC005908.1-201ENST00000468701 347 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.32□□□□□ -2.2
SKA3Q8IX90 AC093303.1-201ENST00000514549 295 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 RNU6-1146P-201ENST00000516282 102 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 SNORA44.1-201ENST00000517031 108 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 AC025647.1-201ENST00000517879 253 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.32□□□□□ -2.2
SKA3Q8IX90 AC084364.2-201ENST00000546924 395 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 AK6P2-201ENST00000549020 471 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 MIR5701-3-201ENST00000578890 82 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 MIR5701-1-201ENST00000585138 82 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 AL645939.4-201ENST00000604495 135 ntBASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 191.3 ms