Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC-1.29□□□□□ -2.62
LINC00643Q86TS7 Y_RNA.670-201ENST00000516255 105 ntBASIC-1.29□□□□□ -2.62
LINC00643Q86TS7 SNORA18.7-201ENST00000516910 131 ntBASIC-1.29□□□□□ -2.62
LINC00643Q86TS7 AC012414.2-201ENST00000559474 187 ntBASIC-1.29□□□□□ -2.62
LINC00643Q86TS7 uc_338.28-201ENST00000612082 187 ntBASIC-1.29□□□□□ -2.62
LINC00643Q86TS7 AL136221.1-201ENST00000621449 509 ntBASIC-1.29□□□□□ -2.62
LINC00643Q86TS7 SNORD38B-202ENST00000625943 69 ntBASIC-1.29□□□□□ -2.62
LINC00643Q86TS7 MIR148A-201ENST00000362215 68 ntBASIC-1.3□□□□□ -2.62
LINC00643Q86TS7 RNU6-580P-201ENST00000365159 107 ntBASIC-1.3□□□□□ -2.62
LINC00643Q86TS7 SNORA3B-201ENST00000391305 131 ntBASIC-1.3□□□□□ -2.62
LINC00643Q86TS7 RNU6-735P-201ENST00000410612 107 ntBASIC-1.3□□□□□ -2.62
LINC00643Q86TS7 AC098592.1-201ENST00000419352 333 ntBASIC-1.3□□□□□ -2.62
LINC00643Q86TS7 ZNF736P12Y-201ENST00000443152 1243 ntBASIC-1.3□□□□□ -2.62
LINC00643Q86TS7 PCNPP5-201ENST00000452246 481 ntBASIC-1.3□□□□□ -2.62
LINC00643Q86TS7 ZNF736P4Y-201ENST00000454995 1243 ntBASIC-1.3□□□□□ -2.62
LINC00643Q86TS7 RNU6-504P-201ENST00000516568 104 ntBASIC-1.3□□□□□ -2.62
LINC00643Q86TS7 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC-1.3□□□□□ -2.62
LINC00643Q86TS7 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC-1.3□□□□□ -2.62
LINC00643Q86TS7 U6.73-201ENST00000619194 103 ntBASIC-1.3□□□□□ -2.62
LINC00643Q86TS7 U4.7-201ENST00000638126 106 ntBASIC-1.3□□□□□ -2.62
LINC00643Q86TS7 ZNF204P-201ENST00000416749 2397 ntBASIC-1.31□□□□□ -2.62
LINC00643Q86TS7 RNU6-692P-201ENST00000384496 107 ntBASIC-1.31□□□□□ -2.62
LINC00643Q86TS7 RNA5SP127-201ENST00000411051 133 ntBASIC-1.31□□□□□ -2.62
LINC00643Q86TS7 AL022718.1-201ENST00000412004 84 ntBASIC-1.31□□□□□ -2.62
LINC00643Q86TS7 RNU7-57P-201ENST00000459540 60 ntBASIC-1.31□□□□□ -2.62
LINC00643Q86TS7 RNU7-43P-201ENST00000516554 64 ntBASIC-1.31□□□□□ -2.62
LINC00643Q86TS7 Y_RNA.689-201ENST00000516589 107 ntBASIC-1.31□□□□□ -2.62
LINC00643Q86TS7 RNU2-56P-201ENST00000516826 190 ntBASIC-1.31□□□□□ -2.62
LINC00643Q86TS7 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-1.31□□□□□ -2.62
LINC00643Q86TS7 SNORD32A-201ENST00000364805 84 ntBASIC-1.32□□□□□ -2.62
LINC00643Q86TS7 RNU6-811P-201ENST00000384069 107 ntBASIC-1.32□□□□□ -2.62
LINC00643Q86TS7 MIR452-201ENST00000385020 85 ntBASIC-1.32□□□□□ -2.62
LINC00643Q86TS7 MIR501-201ENST00000390204 84 ntBASIC-1.32□□□□□ -2.62
LINC00643Q86TS7 SNORD65.1-201ENST00000390889 71 ntBASIC-1.32□□□□□ -2.62
LINC00643Q86TS7 HGF-207ENST00000453018 721 ntTSL 3 BASIC-1.32□□□□□ -2.62
LINC00643Q86TS7 AC010486.2-201ENST00000505572 483 ntBASIC-1.32□□□□□ -2.62
LINC00643Q86TS7 RNU6-469P-201ENST00000516253 101 ntBASIC-1.32□□□□□ -2.62
LINC00643Q86TS7 MTND2P38-201ENST00000522536 667 ntBASIC-1.32□□□□□ -2.62
LINC00643Q86TS7 MIR6798-201ENST00000612887 67 ntBASIC-1.32□□□□□ -2.62
LINC00643Q86TS7 AL157770.1-201ENST00000623049 439 ntBASIC-1.32□□□□□ -2.62
LINC00643Q86TS7 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC-1.32□□□□□ -2.62
LINC00643Q86TS7 MIR377-201ENST00000362145 69 ntBASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 RNU5A-8P-201ENST00000364102 114 ntBASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 MIR563-201ENST00000385080 79 ntBASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 MIR802-201ENST00000390235 94 ntBASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 RNU2-42P-201ENST00000410697 113 ntBASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 RNU6-293P-201ENST00000411259 106 ntBASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 AL512326.2-201ENST00000426359 151 ntBASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 POLR2KP2-201ENST00000438155 177 ntBASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 AC026414.1-201ENST00000504046 698 ntBASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 AC092436.3-201ENST00000511788 257 ntBASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 RNU6-150P-201ENST00000516237 95 ntBASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 RNU6-1291P-201ENST00000516591 104 ntBASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 RNU6-1116P-201ENST00000517269 99 ntBASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 AC103996.1-201ENST00000555468 102 ntBASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 MIR4436A-201ENST00000585278 85 ntBASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 DEFB131E-202ENST00000602581 683 ntBASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 AL590491.3-201ENST00000610731 82 ntBASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 AC231657.1-201ENST00000624313 397 ntBASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 MPP6-209ENST00000625307 126 ntTSL 5 BASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 MIR6828-201ENST00000636181 60 ntBASIC-1.33□□□□□ -2.62
LINC00643Q86TS7 RNU6-1322P-201ENST00000364309 107 ntBASIC-1.34□□□□□ -2.62
LINC00643Q86TS7 MT-TQ-201ENST00000387372 72 ntBASIC-1.34□□□□□ -2.62
LINC00643Q86TS7 RNA5SP482-201ENST00000391269 118 ntBASIC-1.34□□□□□ -2.62
LINC00643Q86TS7 RPL21P38-201ENST00000418090 167 ntBASIC-1.34□□□□□ -2.62
LINC00643Q86TS7 RNU7-102P-201ENST00000458948 62 ntBASIC-1.34□□□□□ -2.62
LINC00643Q86TS7 AC109479.2-201ENST00000517842 174 ntBASIC-1.34□□□□□ -2.62
LINC00643Q86TS7 AC021451.1-201ENST00000523498 1129 ntBASIC-1.34□□□□□ -2.62
LINC00643Q86TS7 AC104383.1-201ENST00000530297 370 ntBASIC-1.34□□□□□ -2.62
LINC00643Q86TS7 AC023442.1-201ENST00000531247 422 ntBASIC-1.34□□□□□ -2.62
LINC00643Q86TS7 AL512347.1-201ENST00000566420 503 ntBASIC-1.34□□□□□ -2.62
LINC00643Q86TS7 MIR4752-201ENST00000579672 72 ntBASIC-1.34□□□□□ -2.62
LINC00643Q86TS7 AC011712.1-201ENST00000588959 234 ntBASIC-1.34□□□□□ -2.62
LINC00643Q86TS7 AC006380.1-201ENST00000603598 186 ntBASIC-1.34□□□□□ -2.62
LINC00643Q86TS7 AL596327.1-201ENST00000603629 213 ntBASIC-1.34□□□□□ -2.62
LINC00643Q86TS7 snoZ196.1-201ENST00000625269 89 ntBASIC-1.34□□□□□ -2.62
LINC00643Q86TS7 RNU6-289P-201ENST00000364093 107 ntBASIC-1.35□□□□□ -2.63
LINC00643Q86TS7 RNU6-396P-201ENST00000365369 105 ntBASIC-1.35□□□□□ -2.63
LINC00643Q86TS7 MIR873-201ENST00000401120 77 ntBASIC-1.35□□□□□ -2.63
LINC00643Q86TS7 RNU6-447P-201ENST00000410293 104 ntBASIC-1.35□□□□□ -2.63
LINC00643Q86TS7 RNU6-1118P-201ENST00000410382 104 ntBASIC-1.35□□□□□ -2.63
LINC00643Q86TS7 RNU6-1076P-201ENST00000410397 104 ntBASIC-1.35□□□□□ -2.63
LINC00643Q86TS7 RNU6-355P-201ENST00000410427 104 ntBASIC-1.35□□□□□ -2.63
LINC00643Q86TS7 RNU6-791P-201ENST00000410467 104 ntBASIC-1.35□□□□□ -2.63
LINC00643Q86TS7 RNU6-705P-201ENST00000410601 104 ntBASIC-1.35□□□□□ -2.63
LINC00643Q86TS7 RNU6-1100P-201ENST00000410691 104 ntBASIC-1.35□□□□□ -2.63
LINC00643Q86TS7 RNU6-860P-201ENST00000410860 104 ntBASIC-1.35□□□□□ -2.63
LINC00643Q86TS7 RNU6-1217P-201ENST00000411276 104 ntBASIC-1.35□□□□□ -2.63
LINC00643Q86TS7 RNU6-785P-201ENST00000411324 104 ntBASIC-1.35□□□□□ -2.63
LINC00643Q86TS7 AL133396.1-201ENST00000432048 687 ntBASIC-1.35□□□□□ -2.63
LINC00643Q86TS7 SUMO1P3-201ENST00000439961 304 ntBASIC-1.35□□□□□ -2.63
LINC00643Q86TS7 MTCYBP42-201ENST00000444653 1130 ntBASIC-1.35□□□□□ -2.63
LINC00643Q86TS7 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC-1.35□□□□□ -2.63
LINC00643Q86TS7 Y_RNA.666-201ENST00000516187 112 ntBASIC-1.35□□□□□ -2.63
LINC00643Q86TS7 SCARNA11.2-201ENST00000517183 154 ntBASIC-1.35□□□□□ -2.63
LINC00643Q86TS7 RPL21P9-201ENST00000556149 474 ntBASIC-1.35□□□□□ -2.63
LINC00643Q86TS7 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC-1.35□□□□□ -2.63
LINC00643Q86TS7 MIR548AD-201ENST00000584780 82 ntBASIC-1.35□□□□□ -2.63
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms