Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AP002453.2-201ENST00000533503 320 ntBASIC-0.41□□□□□ -2.47
USF3Q68DE3 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC-0.41□□□□□ -2.47
USF3Q68DE3 NAMPTP3-201ENST00000569273 224 ntBASIC-0.41□□□□□ -2.47
USF3Q68DE3 MIR4432-201ENST00000581823 84 ntBASIC-0.41□□□□□ -2.47
USF3Q68DE3 AL096861.1-201ENST00000610899 123 ntBASIC-0.41□□□□□ -2.47
USF3Q68DE3 AC006157.1-201ENST00000611750 366 ntBASIC-0.41□□□□□ -2.47
USF3Q68DE3 MIR16-2-201ENST00000362117 81 ntBASIC-0.41□□□□□ -2.48
USF3Q68DE3 Y_RNA.18-201ENST00000362461 102 ntBASIC-0.41□□□□□ -2.48
USF3Q68DE3 Y_RNA.48-201ENST00000362710 103 ntBASIC-0.41□□□□□ -2.48
USF3Q68DE3 RNU6-552P-201ENST00000362869 119 ntBASIC-0.41□□□□□ -2.48
USF3Q68DE3 RNU6-1097P-201ENST00000363586 107 ntBASIC-0.41□□□□□ -2.48
USF3Q68DE3 Y_RNA.256-201ENST00000364594 104 ntBASIC-0.41□□□□□ -2.48
USF3Q68DE3 RNU6-975P-201ENST00000384296 105 ntBASIC-0.41□□□□□ -2.48
USF3Q68DE3 RNU6-364P-201ENST00000384387 107 ntBASIC-0.41□□□□□ -2.48
USF3Q68DE3 RNU6-735P-201ENST00000410612 107 ntBASIC-0.41□□□□□ -2.48
USF3Q68DE3 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC-0.41□□□□□ -2.48
USF3Q68DE3 AC007283.2-201ENST00000424739 197 ntBASIC-0.41□□□□□ -2.48
USF3Q68DE3 AP000542.1-201ENST00000448473 371 ntBASIC-0.41□□□□□ -2.48
USF3Q68DE3 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC-0.41□□□□□ -2.48
USF3Q68DE3 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC-0.41□□□□□ -2.48
USF3Q68DE3 AC091885.1-201ENST00000506658 268 ntBASIC-0.41□□□□□ -2.48
USF3Q68DE3 RNU6-1278P-201ENST00000516130 107 ntBASIC-0.41□□□□□ -2.48
USF3Q68DE3 VN1R87P-201ENST00000596706 487 ntBASIC-0.41□□□□□ -2.48
USF3Q68DE3 AL445435.1-201ENST00000604232 665 ntBASIC-0.41□□□□□ -2.48
USF3Q68DE3 SNORA28-201ENST00000606769 126 ntBASIC-0.41□□□□□ -2.48
USF3Q68DE3 Y_RNA.265-201ENST00000364677 108 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 RNU6-1126P-201ENST00000384002 107 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 MTND3P20-201ENST00000407663 186 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 MIR1302-7-201ENST00000408841 72 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 ELOCP21-201ENST00000412558 336 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 RPL17P35-201ENST00000432217 549 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC-0.42□□□□□ -2.48
USF3Q68DE3 MTND4P15-201ENST00000437913 1033 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 RPS24P1-201ENST00000438550 371 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 AC005042.3-201ENST00000453230 174 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC-0.42□□□□□ -2.48
USF3Q68DE3 AL139824.2-201ENST00000458731 1095 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 RNU6-848P-201ENST00000515948 107 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 RNU6-617P-201ENST00000516147 107 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 RNU6-473P-201ENST00000516164 107 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 RNU6-1049P-201ENST00000516414 107 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 SNORA18.7-201ENST00000516910 131 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.42□□□□□ -2.48
USF3Q68DE3 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC-0.42□□□□□ -2.48
USF3Q68DE3 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC-0.42□□□□□ -2.48
USF3Q68DE3 AC092574.1-201ENST00000609771 420 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 AP002782.1-201ENST00000623107 614 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 MTCO2P23-201ENST00000425216 680 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 AL360271.2-201ENST00000447710 161 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC-0.42□□□□□ -2.48
USF3Q68DE3 RNU6-138P-201ENST00000515952 107 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 AC023157.2-201ENST00000540596 141 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 ADI1P3-201ENST00000549509 470 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC-0.42□□□□□ -2.48
USF3Q68DE3 MIR4300-201ENST00000581016 96 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 DEFB131E-202ENST00000602581 683 ntBASIC-0.42□□□□□ -2.48
USF3Q68DE3 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC-0.43□□□□□ -2.48
USF3Q68DE3 RNU6-777P-201ENST00000364265 104 ntBASIC-0.43□□□□□ -2.48
USF3Q68DE3 Y_RNA.408-201ENST00000383987 102 ntBASIC-0.43□□□□□ -2.48
USF3Q68DE3 U8.16-201ENST00000391279 133 ntBASIC-0.43□□□□□ -2.48
USF3Q68DE3 SNAP23P1-201ENST00000433229 246 ntBASIC-0.43□□□□□ -2.48
USF3Q68DE3 MTND1P4-201ENST00000435196 415 ntBASIC-0.43□□□□□ -2.48
USF3Q68DE3 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC-0.43□□□□□ -2.48
USF3Q68DE3 RNU6-1037P-201ENST00000459571 107 ntBASIC-0.43□□□□□ -2.48
USF3Q68DE3 RNU6-448P-201ENST00000517052 107 ntBASIC-0.43□□□□□ -2.48
USF3Q68DE3 AK6P2-201ENST00000549020 471 ntBASIC-0.43□□□□□ -2.48
USF3Q68DE3 MIR3612-201ENST00000579753 87 ntBASIC-0.43□□□□□ -2.48
USF3Q68DE3 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.43□□□□□ -2.48
USF3Q68DE3 FRG1KP-201ENST00000623592 341 ntBASIC-0.43□□□□□ -2.48
USF3Q68DE3 AL356596.1-201ENST00000624230 379 ntBASIC-0.43□□□□□ -2.48
USF3Q68DE3 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC-0.43□□□□□ -2.48
USF3Q68DE3 MIR635-201ENST00000384830 98 ntBASIC-0.44□□□□□ -2.48
USF3Q68DE3 MTCO1P17-201ENST00000411522 491 ntBASIC-0.44□□□□□ -2.48
USF3Q68DE3 AL158050.1-201ENST00000416077 457 ntBASIC-0.44□□□□□ -2.48
USF3Q68DE3 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC-0.44□□□□□ -2.48
USF3Q68DE3 SNORA31.10-201ENST00000516482 106 ntBASIC-0.44□□□□□ -2.48
USF3Q68DE3 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.44□□□□□ -2.48
USF3Q68DE3 AL596327.1-201ENST00000603629 213 ntBASIC-0.44□□□□□ -2.48
USF3Q68DE3 AL450270.1-201ENST00000606160 391 ntBASIC-0.44□□□□□ -2.48
USF3Q68DE3 AC024940.5-201ENST00000622889 474 ntBASIC-0.44□□□□□ -2.48
USF3Q68DE3 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC-0.44□□□□□ -2.48
USF3Q68DE3 Y_RNA.568-201ENST00000384742 113 ntBASIC-0.44□□□□□ -2.48
USF3Q68DE3 RNU4-46P-201ENST00000410818 138 ntBASIC-0.44□□□□□ -2.48
USF3Q68DE3 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC-0.44□□□□□ -2.48
USF3Q68DE3 SNX3P1X-201ENST00000414887 175 ntBASIC-0.44□□□□□ -2.48
USF3Q68DE3 AL139396.1-201ENST00000421137 167 ntBASIC-0.44□□□□□ -2.48
USF3Q68DE3 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC-0.44□□□□□ -2.48
USF3Q68DE3 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC-0.44□□□□□ -2.48
USF3Q68DE3 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC-0.44□□□□□ -2.48
USF3Q68DE3 RNU6-150P-201ENST00000516237 95 ntBASIC-0.44□□□□□ -2.48
USF3Q68DE3 DEFB131C-201ENST00000528817 165 ntBASIC-0.44□□□□□ -2.48
USF3Q68DE3 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC-0.44□□□□□ -2.48
USF3Q68DE3 AC234772.3-201ENST00000602277 528 ntBASIC-0.44□□□□□ -2.48
USF3Q68DE3 RNU6-88P-201ENST00000606801 100 ntBASIC-0.44□□□□□ -2.48
USF3Q68DE3 RN7SL660P-201ENST00000614852 299 ntBASIC-0.44□□□□□ -2.48
USF3Q68DE3 AC104260.1-201ENST00000616660 539 ntBASIC-0.44□□□□□ -2.48
USF3Q68DE3 MPP6-209ENST00000625307 126 ntTSL 5 BASIC-0.44□□□□□ -2.48
USF3Q68DE3 SNORD114-14-201ENST00000362723 75 ntBASIC-0.45□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms