Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNU6-1026P-201ENST00000384465 108 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 MIR592-201ENST00000384959 97 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 RNA5SP210-201ENST00000391034 120 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.54□□□□□ -2
PTCHD3Q3KNS1 AL357139.1-201ENST00000407792 426 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.54□□□□□ -2
PTCHD3Q3KNS1 AC139712.2-201ENST00000424302 339 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 HMGN2P18-201ENST00000450680 270 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 SNORD127-201ENST00000458892 86 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 AC114982.1-201ENST00000469402 321 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.54□□□□□ -2
PTCHD3Q3KNS1 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.54□□□□□ -2
PTCHD3Q3KNS1 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 RPPH1-2P-201ENST00000516688 293 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 RNU1-117P-201ENST00000517041 158 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 AC006006.1-201ENST00000603082 144 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 AC127459.3-201ENST00000624328 466 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
PTCHD3Q3KNS1 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 RNU6-1305P-201ENST00000364353 104 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 RNA5SP125-201ENST00000364843 120 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 SNORA72.2-201ENST00000365028 127 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 MIR215-201ENST00000384858 110 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 MIR548B-201ENST00000385247 97 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 AC016925.1-201ENST00000458303 298 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 HMGN2P9-201ENST00000476875 229 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 SRIP1-201ENST00000489235 288 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 ATP5EP1-201ENST00000510257 156 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 AC096725.1-201ENST00000514266 313 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 RNU7-110P-201ENST00000516891 62 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 RN7SKP40-201ENST00000517211 242 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 MIR3684-201ENST00000579779 74 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 MIR4753-201ENST00000585119 83 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 AC004467.1-201ENST00000615678 330 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 AL590240.4-201ENST00000616908 390 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 AC010615.1-201ENST00000594254 1764 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-545P-201ENST00000362681 104 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 RNA5SP126-201ENST00000365092 109 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.483-201ENST00000384380 101 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-21P-201ENST00000384710 107 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 MIR1185-2-201ENST00000408687 86 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 RNU2-54P-201ENST00000410299 190 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 AC104389.3-201ENST00000445629 235 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 AC005042.3-201ENST00000453230 174 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 HSPE1P25-201ENST00000455484 251 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-107P-201ENST00000516643 102 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-965P-201ENST00000516721 96 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-570P-201ENST00000517051 105 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 AC023157.2-201ENST00000540596 141 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 AC004486.1-201ENST00000546846 233 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 MIR6817-201ENST00000615588 66 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-290P-201ENST00000365212 101 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.602-201ENST00000410535 92 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 HMGN2P35-201ENST00000412164 270 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-1132P-201ENST00000459214 107 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 AC018868.1-201ENST00000491307 315 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 AC093259.1-201ENST00000509755 300 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 RNA5SP282-201ENST00000516355 108 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-948P-201ENST00000516374 107 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 RNA5SP148-201ENST00000516527 94 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 RNU2-34P-201ENST00000516534 121 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 AC055872.1-201ENST00000570978 278 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 MIR3671-201ENST00000580455 88 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 AL109918.3-201ENST00000603072 338 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 AP001282.2-201ENST00000616149 309 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 AC091932.3-201ENST00000624223 323 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.101-201ENST00000363154 102 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 RNA5SP68-201ENST00000363885 119 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-438P-201ENST00000365561 103 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.446-201ENST00000384178 104 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-301P-201ENST00000384277 107 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-975P-201ENST00000384296 105 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-505P-201ENST00000384427 107 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.541-201ENST00000384640 113 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.562-201ENST00000384695 113 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-1199P-201ENST00000411249 104 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 AC009963.1-201ENST00000417265 157 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 AL137159.1-201ENST00000452808 512 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 MTND4LP30-201ENST00000454092 297 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 174.4 ms