Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 U2.10-201ENST00000620268 191 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL4A3Q01955 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.8□□□□□ -1.96
COL4A3Q01955 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
COL4A3Q01955 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
COL4A3Q01955 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.79□□□□□ -1.96
COL4A3Q01955 MIR512-1-201ENST00000384913 84 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 MIR181B1-201ENST00000385240 110 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
COL4A3Q01955 AL133475.1-201ENST00000404414 305 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 RNA5SP274-201ENST00000410484 108 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 AC023141.4-201ENST00000412031 328 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 PTGES3P4-201ENST00000426243 356 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 AP004217.1-201ENST00000480579 346 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 AC103975.1-201ENST00000482506 483 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 RNA5SP320-201ENST00000516263 124 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 RNU2-44P-201ENST00000516795 194 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 SUMO2P18-201ENST00000518873 252 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 AC009127.3-201ENST00000570531 403 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 MIR3186-201ENST00000577404 85 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 SNORD53-201ENST00000579969 78 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
COL4A3Q01955 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC2.79□□□□□ -1.96
COL4A3Q01955 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
COL4A3Q01955 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.79□□□□□ -1.96
COL4A3Q01955 Y_RNA.75-201ENST00000362927 97 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 RNU6-454P-201ENST00000364292 107 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 SNORD50B-201ENST00000364995 70 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 RNU6-1130P-201ENST00000365434 107 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 Y_RNA.355-201ENST00000365462 98 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 RNU6-449P-201ENST00000383914 107 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 RNU6-22P-201ENST00000384355 107 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 RNU6-748P-201ENST00000384648 107 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 MIR3074-201ENST00000384885 81 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 AL591034.1-201ENST00000407447 340 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 U3.40-201ENST00000408706 208 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 U8.19-201ENST00000459095 133 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 snoU13.18-201ENST00000459483 104 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
COL4A3Q01955 RNA5SP380-201ENST00000517190 98 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 RNU2-12P-201ENST00000517216 168 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 AC021269.2-201ENST00000532318 330 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 AP002001.1-203ENST00000534002 267 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.79□□□□□ -1.96
COL4A3Q01955 TCL6_2.1-201ENST00000615162 119 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.79□□□□□ -1.96
COL4A3Q01955 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
COL4A3Q01955 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
COL4A3Q01955 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
COL4A3Q01955 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.78□□□□□ -1.96
COL4A3Q01955 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC2.78□□□□□ -1.96
COL4A3Q01955 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
COL4A3Q01955 Y_RNA.23-201ENST00000362496 106 ntBASIC2.78□□□□□ -1.96
COL4A3Q01955 RNU6-1272P-201ENST00000362776 107 ntBASIC2.78□□□□□ -1.96
COL4A3Q01955 Y_RNA.121-201ENST00000363309 113 ntBASIC2.78□□□□□ -1.96
COL4A3Q01955 SNORD116-18-201ENST00000383961 92 ntBASIC2.78□□□□□ -1.96
COL4A3Q01955 Y_RNA.488-201ENST00000384403 102 ntBASIC2.78□□□□□ -1.96
COL4A3Q01955 SNORA3.2-201ENST00000408221 125 ntBASIC2.78□□□□□ -1.96
COL4A3Q01955 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.78□□□□□ -1.96
COL4A3Q01955 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.78□□□□□ -1.96
COL4A3Q01955 RNU7-170P-201ENST00000459303 61 ntBASIC2.78□□□□□ -1.96
COL4A3Q01955 AC005840.1-201ENST00000498412 377 ntBASIC2.78□□□□□ -1.96
COL4A3Q01955 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.78□□□□□ -1.96
COL4A3Q01955 AC136628.3-201ENST00000521868 290 ntBASIC2.78□□□□□ -1.96
COL4A3Q01955 EIF4A1P12-201ENST00000551910 141 ntBASIC2.78□□□□□ -1.96
COL4A3Q01955 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC2.78□□□□□ -1.96
COL4A3Q01955 RPS15AP11-201ENST00000594193 385 ntBASIC2.78□□□□□ -1.96
COL4A3Q01955 AC091152.3-201ENST00000604227 325 ntBASIC2.78□□□□□ -1.96
COL4A3Q01955 AC091895.1-201ENST00000624494 256 ntBASIC2.78□□□□□ -1.96
COL4A3Q01955 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.97
COL4A3Q01955 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL4A3Q01955 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.77□□□□□ -1.97
COL4A3Q01955 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC2.77□□□□□ -1.97
COL4A3Q01955 Y_RNA.182-201ENST00000363880 111 ntBASIC2.77□□□□□ -1.97
COL4A3Q01955 MIR592-201ENST00000384959 97 ntBASIC2.77□□□□□ -1.97
COL4A3Q01955 MIR186-201ENST00000384988 86 ntBASIC2.77□□□□□ -1.97
COL4A3Q01955 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.77□□□□□ -1.97
COL4A3Q01955 RNA5SP201-201ENST00000410316 124 ntBASIC2.77□□□□□ -1.97
COL4A3Q01955 AL714022.1-201ENST00000439897 151 ntBASIC2.77□□□□□ -1.97
COL4A3Q01955 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.77□□□□□ -1.97
COL4A3Q01955 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.77□□□□□ -1.97
COL4A3Q01955 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL4A3Q01955 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL4A3Q01955 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC2.77□□□□□ -1.97
COL4A3Q01955 RNU4-84P-201ENST00000364200 139 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 Y_RNA.412-201ENST00000384001 104 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 Y_RNA.415-201ENST00000384012 112 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 RNU6-763P-201ENST00000390865 106 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 RNU6-131P-201ENST00000391144 107 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
COL4A3Q01955 RNU2-51P-201ENST00000410708 197 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 AC027124.2-201ENST00000428249 105 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 HMGN2P16-201ENST00000456802 261 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 RNU6-344P-201ENST00000516635 111 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 NDUFA5P6-201ENST00000542110 379 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 MIR3684-201ENST00000579779 74 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 MIR5006-201ENST00000583027 110 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 AL034555.1-201ENST00000604816 211 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms