Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC3.19□□□□□ -1.9
NKX3-2P78367 MIR5006-201ENST00000583027 110 ntBASIC3.19□□□□□ -1.9
NKX3-2P78367 TCL6_2.1-201ENST00000615162 119 ntBASIC3.19□□□□□ -1.9
NKX3-2P78367 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
NKX3-2P78367 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.19□□□□□ -1.9
NKX3-2P78367 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
NKX3-2P78367 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
NKX3-2P78367 MIR148B-201ENST00000362252 99 ntBASIC3.18□□□□□ -1.9
NKX3-2P78367 snoU2_19.1-201ENST00000362361 80 ntBASIC3.18□□□□□ -1.9
NKX3-2P78367 U3.9-201ENST00000363823 204 ntBASIC3.18□□□□□ -1.9
NKX3-2P78367 SNORA12-201ENST00000391162 147 ntBASIC3.18□□□□□ -1.9
NKX3-2P78367 RNU6ATAC19P-201ENST00000408096 110 ntBASIC3.18□□□□□ -1.9
NKX3-2P78367 RNA5SP274-201ENST00000410484 108 ntBASIC3.18□□□□□ -1.9
NKX3-2P78367 RPL32P35-201ENST00000415214 394 ntBASIC3.18□□□□□ -1.9
NKX3-2P78367 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.18□□□□□ -1.9
NKX3-2P78367 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.18□□□□□ -1.9
NKX3-2P78367 AL135790.2-201ENST00000437701 267 ntBASIC3.18□□□□□ -1.9
NKX3-2P78367 AC009969.1-201ENST00000438726 172 ntBASIC3.18□□□□□ -1.9
NKX3-2P78367 RPS3P1-201ENST00000456781 192 ntBASIC3.18□□□□□ -1.9
NKX3-2P78367 U8.19-201ENST00000459095 133 ntBASIC3.18□□□□□ -1.9
NKX3-2P78367 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
NKX3-2P78367 RNU6-344P-201ENST00000516635 111 ntBASIC3.18□□□□□ -1.9
NKX3-2P78367 SUMO2P18-201ENST00000518873 252 ntBASIC3.18□□□□□ -1.9
NKX3-2P78367 AC006380.1-201ENST00000603598 186 ntBASIC3.18□□□□□ -1.9
NKX3-2P78367 SNORD11B-201ENST00000607707 90 ntBASIC3.18□□□□□ -1.9
NKX3-2P78367 AC004832.4-201ENST00000608952 331 ntBASIC3.18□□□□□ -1.9
NKX3-2P78367 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC3.18□□□□□ -1.9
NKX3-2P78367 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
NKX3-2P78367 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.18□□□□□ -1.9
NKX3-2P78367 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
NKX3-2P78367 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
NKX3-2P78367 RNU6-655P-201ENST00000362858 107 ntBASIC3.17□□□□□ -1.9
NKX3-2P78367 SNORD113-1-201ENST00000365321 69 ntBASIC3.17□□□□□ -1.9
NKX3-2P78367 Y_RNA.441-201ENST00000384123 112 ntBASIC3.17□□□□□ -1.9
NKX3-2P78367 Y_RNA.571-201ENST00000384753 98 ntBASIC3.17□□□□□ -1.9
NKX3-2P78367 MIR613-201ENST00000385248 95 ntBASIC3.17□□□□□ -1.9
NKX3-2P78367 RNU6-763P-201ENST00000390865 106 ntBASIC3.17□□□□□ -1.9
NKX3-2P78367 RNU2-52P-201ENST00000410680 190 ntBASIC3.17□□□□□ -1.9
NKX3-2P78367 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.17□□□□□ -1.9
NKX3-2P78367 RNU2-44P-201ENST00000516795 194 ntBASIC3.17□□□□□ -1.9
NKX3-2P78367 AC025281.1-201ENST00000567026 265 ntBASIC3.17□□□□□ -1.9
NKX3-2P78367 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.17□□□□□ -1.9
NKX3-2P78367 AC068205.3-201ENST00000636385 468 ntBASIC3.17□□□□□ -1.9
NKX3-2P78367 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
NKX3-2P78367 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
NKX3-2P78367 AC068700.1-201ENST00000565862 3754 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
NKX3-2P78367 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.16□□□□□ -1.9
NKX3-2P78367 RNU6-1210P-201ENST00000363775 107 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 RNU6-704P-201ENST00000364162 103 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 RNU6-1130P-201ENST00000365434 107 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 RNU6-1027P-201ENST00000383998 107 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 RNU1-57P-201ENST00000384491 166 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 AL138827.1-201ENST00000402666 306 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 RNU2-2P-201ENST00000410396 191 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 AL365496.1-201ENST00000426885 215 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
NKX3-2P78367 AL031183.1-201ENST00000457667 207 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.16□□□□□ -1.9
NKX3-2P78367 AC140059.1-201ENST00000489238 361 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 SNORA31.21-201ENST00000517180 77 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 RNU2-4P-201ENST00000606190 192 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 U2.15-201ENST00000611544 191 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 U2.16-201ENST00000613119 191 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 U2.12-201ENST00000613778 191 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 U2.9-201ENST00000615427 191 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 U2.11-201ENST00000616345 191 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 U2.2-201ENST00000616535 191 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 U2.3-201ENST00000617785 191 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 U2.19-201ENST00000618602 191 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 RNU2-1-201ENST00000618664 191 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 U2.6-201ENST00000619225 191 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 U2.5-201ENST00000619465 191 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 U2.10-201ENST00000620268 191 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
NKX3-2P78367 GABRG2-229ENST00000641017 3628 ntBASIC3.16□□□□□ -1.9
NKX3-2P78367 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.9
NKX3-2P78367 RNA5SP383-201ENST00000362934 120 ntBASIC3.15□□□□□ -1.91
NKX3-2P78367 RNU6-801P-201ENST00000364087 105 ntBASIC3.15□□□□□ -1.91
NKX3-2P78367 SNORD115-30-201ENST00000364117 82 ntBASIC3.15□□□□□ -1.91
NKX3-2P78367 RNU1-112P-201ENST00000364401 164 ntBASIC3.15□□□□□ -1.91
NKX3-2P78367 RNU6-1248P-201ENST00000391096 64 ntBASIC3.15□□□□□ -1.91
NKX3-2P78367 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.15□□□□□ -1.91
NKX3-2P78367 RPL36AP48-201ENST00000485521 314 ntBASIC3.15□□□□□ -1.91
NKX3-2P78367 SNORA31.1-201ENST00000515993 133 ntBASIC3.15□□□□□ -1.91
NKX3-2P78367 SNORA31.5-201ENST00000516190 133 ntBASIC3.15□□□□□ -1.91
NKX3-2P78367 HSPE1P18-201ENST00000517602 280 ntBASIC3.15□□□□□ -1.91
NKX3-2P78367 AC027176.1-201ENST00000560204 514 ntBASIC3.15□□□□□ -1.91
NKX3-2P78367 AC009127.3-201ENST00000570531 403 ntBASIC3.15□□□□□ -1.91
NKX3-2P78367 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC3.15□□□□□ -1.91
NKX3-2P78367 AC108706.1-201ENST00000611053 297 ntBASIC3.15□□□□□ -1.91
NKX3-2P78367 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.15□□□□□ -1.91
NKX3-2P78367 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
NKX3-2P78367 AC069528.2-201ENST00000624849 1991 ntBASIC3.14□□□□□ -1.91
NKX3-2P78367 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
NKX3-2P78367 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
NKX3-2P78367 RNU6-859P-201ENST00000362728 107 ntBASIC3.14□□□□□ -1.91
NKX3-2P78367 Y_RNA.238-201ENST00000364441 102 ntBASIC3.14□□□□□ -1.91
NKX3-2P78367 DYNLT3P1-201ENST00000378574 347 ntBASIC3.14□□□□□ -1.91
NKX3-2P78367 SNORA67.2-201ENST00000384300 149 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 123 ms