Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.01□□□□□ -2.41
FOXA3P55318 RNA5SP62-201ENST00000363457 110 ntBASIC0□□□□□ -2.41
FOXA3P55318 RNU6-137P-201ENST00000363680 108 ntBASIC0□□□□□ -2.41
FOXA3P55318 RNU5F-7P-201ENST00000363696 115 ntBASIC0□□□□□ -2.41
FOXA3P55318 Y_RNA.267-201ENST00000364679 109 ntBASIC0□□□□□ -2.41
FOXA3P55318 RNU6-1127P-201ENST00000384580 107 ntBASIC0□□□□□ -2.41
FOXA3P55318 SNORD73A-201ENST00000386062 65 ntBASIC0□□□□□ -2.41
FOXA3P55318 AL390237.1-201ENST00000404226 1415 ntBASIC0□□□□□ -2.41
FOXA3P55318 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC0□□□□□ -2.41
FOXA3P55318 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC0□□□□□ -2.41
FOXA3P55318 USP9YP12-201ENST00000450481 570 ntBASIC0□□□□□ -2.41
FOXA3P55318 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC0□□□□□ -2.41
FOXA3P55318 SCARNA18-201ENST00000459004 134 ntBASIC0□□□□□ -2.41
FOXA3P55318 RNU7-182P-201ENST00000459009 62 ntBASIC0□□□□□ -2.41
FOXA3P55318 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC0□□□□□ -2.41
FOXA3P55318 RNU2-46P-201ENST00000517038 113 ntBASIC0□□□□□ -2.41
FOXA3P55318 AP003716.2-201ENST00000528260 108 ntBASIC0□□□□□ -2.41
FOXA3P55318 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0□□□□□ -2.41
FOXA3P55318 AC023157.2-201ENST00000540596 141 ntBASIC0□□□□□ -2.41
FOXA3P55318 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC0□□□□□ -2.41
FOXA3P55318 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC0□□□□□ -2.41
FOXA3P55318 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC0□□□□□ -2.41
FOXA3P55318 MIR4438-201ENST00000585271 93 ntBASIC0□□□□□ -2.41
FOXA3P55318 AC068790.2-201ENST00000602601 557 ntBASIC0□□□□□ -2.41
FOXA3P55318 AP000811.1-201ENST00000603803 651 ntBASIC0□□□□□ -2.41
FOXA3P55318 AC025449.1-201ENST00000603896 529 ntBASIC0□□□□□ -2.41
FOXA3P55318 LARP7P1-201ENST00000605576 316 ntBASIC0□□□□□ -2.41
FOXA3P55318 AC007684.1-201ENST00000609671 477 ntBASIC0□□□□□ -2.41
FOXA3P55318 AC091304.9-201ENST00000612091 226 ntBASIC0□□□□□ -2.41
FOXA3P55318 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0□□□□□ -2.41
FOXA3P55318 AC139792.3-201ENST00000623525 224 ntBASIC0□□□□□ -2.41
FOXA3P55318 SCARNA4-201ENST00000629045 128 ntBASIC0□□□□□ -2.41
FOXA3P55318 MIR6079-201ENST00000635807 62 ntBASIC0□□□□□ -2.41
FOXA3P55318 RNU6-227P-201ENST00000362865 103 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 Y_RNA.100-201ENST00000363141 102 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 SNORD114-23-201ENST00000363536 72 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 SNORD87-201ENST00000364849 89 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 RNU5E-5P-201ENST00000365379 116 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 RNU6-74P-201ENST00000384235 107 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 MIR1-2-201ENST00000384961 85 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 MIR454-201ENST00000390180 115 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 AL355143.1-201ENST00000407101 841 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 SNORD111-201ENST00000408139 94 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 MIR1287-201ENST00000408492 90 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 RNU4-46P-201ENST00000410818 138 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 RPS26P42-201ENST00000413485 326 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 AL512286.1-201ENST00000439244 400 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 AC093019.1-201ENST00000443135 252 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 RPS29P27-201ENST00000463711 170 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 AC007215.1-201ENST00000464893 276 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 NDUFA4P2-201ENST00000489989 244 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC-0.01□□□□□ -2.41
FOXA3P55318 Vault.3-201ENST00000516676 95 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 RNU2-56P-201ENST00000516826 190 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 RNU6-410P-201ENST00000517006 107 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 AC022878.1-201ENST00000530684 149 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 AC027288.2-201ENST00000553028 243 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 MIR4667-201ENST00000578933 66 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC-0.01□□□□□ -2.41
FOXA3P55318 MIR4999-201ENST00000585029 91 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 BNIP3P39-201ENST00000601077 554 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 7SK.7-201ENST00000603504 247 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 Z84480.1-201ENST00000605131 311 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 AC008873.1-201ENST00000625051 138 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 SEPT14P19-203ENST00000633205 211 ntBASIC-0.01□□□□□ -2.41
FOXA3P55318 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC-0.01□□□□□ -2.41
FOXA3P55318 MTND4P4-201ENST00000439033 1366 ntBASIC-0.02□□□□□ -2.41
FOXA3P55318 MIR1-1-201ENST00000362147 71 ntBASIC-0.02□□□□□ -2.41
FOXA3P55318 MIRLET7C-201ENST00000362160 84 ntBASIC-0.02□□□□□ -2.41
FOXA3P55318 Y_RNA.116-201ENST00000363292 103 ntBASIC-0.02□□□□□ -2.41
FOXA3P55318 Y_RNA.226-201ENST00000364337 114 ntBASIC-0.02□□□□□ -2.41
FOXA3P55318 MIR1827-201ENST00000408549 66 ntBASIC-0.02□□□□□ -2.41
FOXA3P55318 MIR1185-2-201ENST00000408687 86 ntBASIC-0.02□□□□□ -2.41
FOXA3P55318 RNU6-195P-201ENST00000411352 109 ntBASIC-0.02□□□□□ -2.41
FOXA3P55318 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC-0.02□□□□□ -2.41
FOXA3P55318 MTCO2P3-201ENST00000442543 421 ntBASIC-0.02□□□□□ -2.41
FOXA3P55318 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC-0.02□□□□□ -2.41
FOXA3P55318 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC-0.02□□□□□ -2.41
FOXA3P55318 MTCO3P10-201ENST00000455912 772 ntBASIC-0.02□□□□□ -2.41
FOXA3P55318 AC092989.1-201ENST00000481235 277 ntBASIC-0.02□□□□□ -2.41
FOXA3P55318 RNU7-41P-201ENST00000515917 61 ntBASIC-0.02□□□□□ -2.41
FOXA3P55318 SNORA25.12-201ENST00000516202 82 ntBASIC-0.02□□□□□ -2.41
FOXA3P55318 Y_RNA.676-201ENST00000516393 96 ntBASIC-0.02□□□□□ -2.41
FOXA3P55318 AC069113.1-201ENST00000517763 267 ntBASIC-0.02□□□□□ -2.41
FOXA3P55318 AC104383.1-201ENST00000530297 370 ntBASIC-0.02□□□□□ -2.41
FOXA3P55318 MIR6718-201ENST00000616153 80 ntBASIC-0.02□□□□□ -2.41
FOXA3P55318 AC137590.2-201ENST00000619709 240 ntBASIC-0.02□□□□□ -2.41
FOXA3P55318 AL008636.1-201ENST00000625038 1018 ntBASIC-0.02□□□□□ -2.41
FOXA3P55318 MIR18A-201ENST00000362310 71 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 SNORA1B-201ENST00000362535 133 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 RNU6-1266P-201ENST00000362794 105 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 Y_RNA.123-201ENST00000363338 102 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 RNU6-654P-201ENST00000364373 107 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 RNY4P34-201ENST00000364779 95 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 Y_RNA.336-201ENST00000365307 109 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 RNU6-1286P-201ENST00000383871 107 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 RNU6-815P-201ENST00000384080 113 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 RNU6-1106P-201ENST00000390845 107 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 RNU6-679P-201ENST00000391003 106 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 MIR450B-201ENST00000401182 78 ntBASIC-0.03□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms