Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 MRPS10P1-201ENST00000448483 130 ntBASIC2.48□□□□□ -2.01
TTC3P53804 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.48□□□□□ -2.01
TTC3P53804 snoU13.14-201ENST00000459372 104 ntBASIC2.48□□□□□ -2.01
TTC3P53804 AC007215.1-201ENST00000464893 276 ntBASIC2.48□□□□□ -2.01
TTC3P53804 RPL26P26-201ENST00000480251 434 ntBASIC2.48□□□□□ -2.01
TTC3P53804 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.48□□□□□ -2.01
TTC3P53804 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.48□□□□□ -2.01
TTC3P53804 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.48□□□□□ -2.01
TTC3P53804 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.48□□□□□ -2.01
TTC3P53804 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.48□□□□□ -2.01
TTC3P53804 MIR3923-201ENST00000579521 83 ntBASIC2.48□□□□□ -2.01
TTC3P53804 AC010928.2-201ENST00000588017 287 ntBASIC2.48□□□□□ -2.01
TTC3P53804 AC020895.1-201ENST00000595362 272 ntBASIC2.48□□□□□ -2.01
TTC3P53804 AL133393.1-201ENST00000603277 287 ntBASIC2.48□□□□□ -2.01
TTC3P53804 SNRPGP20-201ENST00000604477 205 ntBASIC2.48□□□□□ -2.01
TTC3P53804 AL357075.2-201ENST00000614906 189 ntBASIC2.48□□□□□ -2.01
TTC3P53804 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.48□□□□□ -2.01
TTC3P53804 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
TTC3P53804 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
TTC3P53804 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.48□□□□□ -2.01
TTC3P53804 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
TTC3P53804 MIR21-201ENST00000362134 72 ntBASIC2.47□□□□□ -2.01
TTC3P53804 Y_RNA.275-201ENST00000364726 110 ntBASIC2.47□□□□□ -2.01
TTC3P53804 RNU6-102P-201ENST00000384485 104 ntBASIC2.47□□□□□ -2.01
TTC3P53804 AC105137.2-201ENST00000569073 466 ntBASIC2.47□□□□□ -2.01
TTC3P53804 AL078605.1-201ENST00000603529 500 ntBASIC2.47□□□□□ -2.01
TTC3P53804 MIR3199-2-201ENST00000636243 86 ntBASIC2.47□□□□□ -2.01
TTC3P53804 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.47□□□□□ -2.01
TTC3P53804 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.47□□□□□ -2.01
TTC3P53804 RNU6-799P-201ENST00000363567 107 ntBASIC2.47□□□□□ -2.01
TTC3P53804 RNU6-1062P-201ENST00000383908 107 ntBASIC2.47□□□□□ -2.01
TTC3P53804 AIMP1P2-201ENST00000425294 312 ntBASIC2.47□□□□□ -2.01
TTC3P53804 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.47□□□□□ -2.01
TTC3P53804 AL441985.1-201ENST00000457727 251 ntBASIC2.47□□□□□ -2.01
TTC3P53804 AP000870.1-201ENST00000472927 406 ntBASIC2.47□□□□□ -2.01
TTC3P53804 Y_RNA.683-201ENST00000516508 93 ntBASIC2.47□□□□□ -2.01
TTC3P53804 Y_RNA.700-201ENST00000516806 100 ntBASIC2.47□□□□□ -2.01
TTC3P53804 RNU6-826P-201ENST00000516827 104 ntBASIC2.47□□□□□ -2.01
TTC3P53804 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.47□□□□□ -2.01
TTC3P53804 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.01
TTC3P53804 AC099654.7-201ENST00000635788 2127 ntBASIC2.46□□□□□ -2.02
TTC3P53804 Y_RNA.150-201ENST00000363562 102 ntBASIC2.46□□□□□ -2.02
TTC3P53804 RNU1-91P-201ENST00000364746 163 ntBASIC2.46□□□□□ -2.02
TTC3P53804 RNU6-20P-201ENST00000384106 107 ntBASIC2.46□□□□□ -2.02
TTC3P53804 SNORD88.1-201ENST00000408684 91 ntBASIC2.46□□□□□ -2.02
TTC3P53804 HMGN2P16-201ENST00000456802 261 ntBASIC2.46□□□□□ -2.02
TTC3P53804 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.46□□□□□ -2.02
TTC3P53804 RNU6-928P-201ENST00000516876 104 ntBASIC2.46□□□□□ -2.02
TTC3P53804 RNU7-110P-201ENST00000516891 62 ntBASIC2.46□□□□□ -2.02
TTC3P53804 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.46□□□□□ -2.02
TTC3P53804 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.46□□□□□ -2.02
TTC3P53804 AL512605.2-201ENST00000592972 256 ntBASIC2.46□□□□□ -2.02
TTC3P53804 AC005296.1-201ENST00000616145 209 ntBASIC2.46□□□□□ -2.02
TTC3P53804 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.46□□□□□ -2.02
TTC3P53804 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
TTC3P53804 MAPK10-322ENST00000641485 4530 ntBASIC2.46□□□□□ -2.02
TTC3P53804 MIR410-201ENST00000362222 80 ntBASIC2.46□□□□□ -2.02
TTC3P53804 Y_RNA.8-201ENST00000362353 102 ntBASIC2.46□□□□□ -2.02
TTC3P53804 Y_RNA.29-201ENST00000362570 113 ntBASIC2.46□□□□□ -2.02
TTC3P53804 RNU6-545P-201ENST00000362681 104 ntBASIC2.46□□□□□ -2.02
TTC3P53804 Y_RNA.136-201ENST00000363444 102 ntBASIC2.46□□□□□ -2.02
TTC3P53804 RNU6-727P-201ENST00000363592 107 ntBASIC2.46□□□□□ -2.02
TTC3P53804 SNORA12-201ENST00000391162 147 ntBASIC2.46□□□□□ -2.02
TTC3P53804 RNA5SP38-201ENST00000410750 119 ntBASIC2.46□□□□□ -2.02
TTC3P53804 AC012306.1-201ENST00000423267 114 ntBASIC2.46□□□□□ -2.02
TTC3P53804 COX6CP14-201ENST00000469580 174 ntBASIC2.46□□□□□ -2.02
TTC3P53804 RPL36AP48-201ENST00000485521 314 ntBASIC2.46□□□□□ -2.02
TTC3P53804 RNU6-991P-201ENST00000516168 107 ntBASIC2.46□□□□□ -2.02
TTC3P53804 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.46□□□□□ -2.02
TTC3P53804 AC026470.2-201ENST00000561492 181 ntBASIC2.46□□□□□ -2.02
TTC3P53804 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.46□□□□□ -2.02
TTC3P53804 AC010999.1-201ENST00000611856 324 ntBASIC2.46□□□□□ -2.02
TTC3P53804 MIR219B-201ENST00000637023 88 ntBASIC2.46□□□□□ -2.02
TTC3P53804 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC2.45□□□□□ -2.02
TTC3P53804 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.45□□□□□ -2.02
TTC3P53804 AL136164.4-201ENST00000625013 2135 ntBASIC2.45□□□□□ -2.02
TTC3P53804 RNU6-270P-201ENST00000364131 105 ntBASIC2.45□□□□□ -2.02
TTC3P53804 Y_RNA.446-201ENST00000384178 104 ntBASIC2.45□□□□□ -2.02
TTC3P53804 RNU6-843P-201ENST00000384454 104 ntBASIC2.45□□□□□ -2.02
TTC3P53804 SNORA64-201ENST00000384674 134 ntBASIC2.45□□□□□ -2.02
TTC3P53804 RNU6-21P-201ENST00000384710 107 ntBASIC2.45□□□□□ -2.02
TTC3P53804 MIR549A-201ENST00000385268 96 ntBASIC2.45□□□□□ -2.02
TTC3P53804 MTND2P29-201ENST00000438595 412 ntBASIC2.45□□□□□ -2.02
TTC3P53804 SUMO1P2-201ENST00000452524 304 ntBASIC2.45□□□□□ -2.02
TTC3P53804 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.45□□□□□ -2.02
TTC3P53804 SNORA27.4-201ENST00000516650 95 ntBASIC2.45□□□□□ -2.02
TTC3P53804 AC018448.1-201ENST00000552843 316 ntBASIC2.45□□□□□ -2.02
TTC3P53804 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.45□□□□□ -2.02
TTC3P53804 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
TTC3P53804 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
TTC3P53804 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
TTC3P53804 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.45□□□□□ -2.02
TTC3P53804 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
TTC3P53804 RNU6-324P-201ENST00000363957 106 ntBASIC2.44□□□□□ -2.02
TTC3P53804 Y_RNA.230-201ENST00000364348 109 ntBASIC2.44□□□□□ -2.02
TTC3P53804 RNU6-740P-201ENST00000364734 105 ntBASIC2.44□□□□□ -2.02
TTC3P53804 SNORA72.2-201ENST00000365028 127 ntBASIC2.44□□□□□ -2.02
TTC3P53804 SNORA36A-201ENST00000384221 132 ntBASIC2.44□□□□□ -2.02
TTC3P53804 Y_RNA.590-201ENST00000410140 107 ntBASIC2.44□□□□□ -2.02
TTC3P53804 RPL23AP36-201ENST00000413895 458 ntBASIC2.44□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms