Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.68□□□□□ -2.3
COL18A1P39060 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.68□□□□□ -2.3
COL18A1P39060 MIR4661-201ENST00000582720 75 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 AC004223.2-201ENST00000590309 544 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 AC040904.1-201ENST00000590850 223 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 AL391516.1-201ENST00000554380 2449 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 Y_RNA.287-201ENST00000364853 94 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 RNU6-1286P-201ENST00000383871 107 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 RNU5A-6P-201ENST00000384136 116 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 MIR1265-201ENST00000408444 86 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 MTCYBP8-201ENST00000422855 651 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 HMGN2P34-201ENST00000437647 269 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 MTCO3P8-201ENST00000453691 755 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC0.68□□□□□ -2.3
COL18A1P39060 snoU13.6-201ENST00000458785 104 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 RNU6-1198P-201ENST00000516904 67 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 RNA5SP54-201ENST00000516951 92 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 MDM2-233ENST00000545204 398 ntTSL 5 BASIC0.68□□□□□ -2.3
COL18A1P39060 AL022345.2-201ENST00000606307 135 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 AC109347.2-201ENST00000610220 349 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 HULC.1-201ENST00000612720 240 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 uc_338.34-201ENST00000617467 174 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 Six3os1_7.1-201ENST00000621512 201 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 AC027335.2-201ENST00000624030 375 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 OR5AK4P-201ENST00000635912 903 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 Y_RNA.159-201ENST00000363674 87 ntBASIC0.67□□□□□ -2.3
COL18A1P39060 RNA5SP331-201ENST00000364986 107 ntBASIC0.67□□□□□ -2.3
COL18A1P39060 SNORA22-201ENST00000383907 134 ntBASIC0.67□□□□□ -2.3
COL18A1P39060 SNORA22C-201ENST00000384614 134 ntBASIC0.67□□□□□ -2.3
COL18A1P39060 MIR549A-201ENST00000385268 96 ntBASIC0.67□□□□□ -2.3
COL18A1P39060 RNA5SP63-201ENST00000391225 112 ntBASIC0.67□□□□□ -2.3
COL18A1P39060 MTND3P9-201ENST00000429526 346 ntBASIC0.67□□□□□ -2.3
COL18A1P39060 CETN4P-201ENST00000432407 469 ntBASIC0.67□□□□□ -2.3
COL18A1P39060 RNU7-180P-201ENST00000459240 63 ntBASIC0.67□□□□□ -2.3
COL18A1P39060 RNU7-34P-201ENST00000459394 64 ntBASIC0.67□□□□□ -2.3
COL18A1P39060 RPL39P38-201ENST00000467018 153 ntBASIC0.67□□□□□ -2.3
COL18A1P39060 AC136932.1-201ENST00000574771 208 ntBASIC0.67□□□□□ -2.3
COL18A1P39060 MIR4742-201ENST00000581069 85 ntBASIC0.67□□□□□ -2.3
COL18A1P39060 AL162424.1-201ENST00000602325 221 ntBASIC0.67□□□□□ -2.3
COL18A1P39060 Z99497.2-201ENST00000603634 310 ntBASIC0.67□□□□□ -2.3
COL18A1P39060 AL513534.2-201ENST00000603836 250 ntBASIC0.67□□□□□ -2.3
COL18A1P39060 AC009509.4-201ENST00000619202 509 ntBASIC0.67□□□□□ -2.3
COL18A1P39060 Y_RNA.169-201ENST00000363745 96 ntBASIC0.66□□□□□ -2.3
COL18A1P39060 RNU6-1317P-201ENST00000364582 104 ntBASIC0.66□□□□□ -2.3
COL18A1P39060 RNU6-1103P-201ENST00000384150 107 ntBASIC0.66□□□□□ -2.3
COL18A1P39060 MIR146A-201ENST00000385201 99 ntBASIC0.66□□□□□ -2.3
COL18A1P39060 MIR92A1-201ENST00000385233 78 ntBASIC0.66□□□□□ -2.3
COL18A1P39060 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
COL18A1P39060 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC0.66□□□□□ -2.3
COL18A1P39060 RNU2-70P-201ENST00000410718 179 ntBASIC0.66□□□□□ -2.3
COL18A1P39060 AL445567.1-201ENST00000439121 144 ntBASIC0.66□□□□□ -2.3
COL18A1P39060 TPTE2P5-203ENST00000458118 728 ntBASIC0.66□□□□□ -2.3
COL18A1P39060 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC0.66□□□□□ -2.3
COL18A1P39060 CENPUP1-201ENST00000526649 1202 ntBASIC0.66□□□□□ -2.3
COL18A1P39060 DEFB131C-201ENST00000528817 165 ntBASIC0.66□□□□□ -2.3
COL18A1P39060 MRPS36P4-201ENST00000534436 298 ntBASIC0.66□□□□□ -2.3
COL18A1P39060 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC0.66□□□□□ -2.3
COL18A1P39060 AL929325.1-201ENST00000603096 117 ntBASIC0.66□□□□□ -2.3
COL18A1P39060 AC064836.2-201ENST00000609491 462 ntBASIC0.66□□□□□ -2.3
COL18A1P39060 snoZ196.1-201ENST00000625269 89 ntBASIC0.66□□□□□ -2.3
COL18A1P39060 MIR1912-201ENST00000410389 80 ntBASIC0.65□□□□□ -2.3
COL18A1P39060 RNU6-1054P-201ENST00000411293 104 ntBASIC0.65□□□□□ -2.3
COL18A1P39060 AC013410.2-201ENST00000422627 201 ntBASIC0.65□□□□□ -2.3
COL18A1P39060 RPL39P28-201ENST00000465655 155 ntBASIC0.65□□□□□ -2.3
COL18A1P39060 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC0.65□□□□□ -2.3
COL18A1P39060 RNU6-1069P-201ENST00000516612 133 ntBASIC0.65□□□□□ -2.3
COL18A1P39060 RNU6-344P-201ENST00000516635 111 ntBASIC0.65□□□□□ -2.3
COL18A1P39060 MTND1P35-201ENST00000526739 508 ntBASIC0.65□□□□□ -2.3
COL18A1P39060 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.65□□□□□ -2.3
COL18A1P39060 SCOCP1-201ENST00000554676 349 ntBASIC0.65□□□□□ -2.3
COL18A1P39060 AC021506.2-201ENST00000612354 169 ntBASIC0.65□□□□□ -2.3
COL18A1P39060 AL359075.3-201ENST00000613288 217 ntBASIC0.65□□□□□ -2.3
COL18A1P39060 RNU6-1187P-201ENST00000364771 110 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 RNU6-1329P-201ENST00000365664 107 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 RNU6-214P-201ENST00000384130 107 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 RNU6-1031P-201ENST00000384773 107 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 RNA5SP219-201ENST00000390940 113 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 RNU6-57P-201ENST00000411348 103 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC0.65□□□□□ -2.31
COL18A1P39060 AC008134.1-201ENST00000420943 193 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 AC010154.1-201ENST00000425857 269 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC0.65□□□□□ -2.31
COL18A1P39060 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC0.65□□□□□ -2.31
COL18A1P39060 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC0.65□□□□□ -2.31
COL18A1P39060 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.65□□□□□ -2.31
COL18A1P39060 ZNF736P8Y-201ENST00000451913 669 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 MTCO2P18-201ENST00000457151 658 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 RNU6-221P-201ENST00000459541 99 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 RNU7-94P-201ENST00000459576 63 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.65□□□□□ -2.31
COL18A1P39060 RPL39P5-202ENST00000512505 151 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 SNORA31.4-201ENST00000516049 129 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 RNU6-189P-201ENST00000516120 101 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 AL157687.1-201ENST00000554853 619 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.65□□□□□ -2.31
COL18A1P39060 TPRKBP2-201ENST00000565969 475 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 MIR4528-201ENST00000577763 90 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 MIR4653-201ENST00000585107 83 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 MIR8076-201ENST00000611401 83 ntBASIC0.65□□□□□ -2.31
COL18A1P39060 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms