Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.91□□□□□ -1.94
MSX2P35548 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC2.91□□□□□ -1.94
MSX2P35548 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.91□□□□□ -1.94
MSX2P35548 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.91□□□□□ -1.94
MSX2P35548 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.9□□□□□ -1.94
MSX2P35548 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.9□□□□□ -1.94
MSX2P35548 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.9□□□□□ -1.94
MSX2P35548 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.9□□□□□ -1.95
MSX2P35548 Z83843.1-201ENST00000604070 3685 ntBASIC2.9□□□□□ -1.95
MSX2P35548 SNORA68.1-201ENST00000364537 132 ntBASIC2.9□□□□□ -1.95
MSX2P35548 Y_RNA.400-201ENST00000383963 111 ntBASIC2.9□□□□□ -1.95
MSX2P35548 RNU1-57P-201ENST00000384491 166 ntBASIC2.9□□□□□ -1.95
MSX2P35548 RNU6-1081P-201ENST00000384537 107 ntBASIC2.9□□□□□ -1.95
MSX2P35548 SNORD67-201ENST00000390833 111 ntBASIC2.9□□□□□ -1.95
MSX2P35548 RNA5SP274-201ENST00000410484 108 ntBASIC2.9□□□□□ -1.95
MSX2P35548 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.9□□□□□ -1.95
MSX2P35548 AC112771.1-201ENST00000463581 102 ntBASIC2.9□□□□□ -1.95
MSX2P35548 SCARNA17.1-201ENST00000516211 143 ntBASIC2.9□□□□□ -1.95
MSX2P35548 SCARNA17.2-201ENST00000516334 143 ntBASIC2.9□□□□□ -1.95
MSX2P35548 RNU2-44P-201ENST00000516795 194 ntBASIC2.9□□□□□ -1.95
MSX2P35548 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.9□□□□□ -1.95
MSX2P35548 AC079598.5-201ENST00000547460 117 ntBASIC2.9□□□□□ -1.95
MSX2P35548 SCARNA17.4-201ENST00000614296 143 ntBASIC2.9□□□□□ -1.95
MSX2P35548 AC013791.1-201ENST00000616619 62 ntBASIC2.9□□□□□ -1.95
MSX2P35548 AC007318.2-201ENST00000620999 243 ntBASIC2.9□□□□□ -1.95
MSX2P35548 AC008873.1-201ENST00000625051 138 ntBASIC2.9□□□□□ -1.95
MSX2P35548 MIR6733-201ENST00000635723 61 ntBASIC2.9□□□□□ -1.95
MSX2P35548 U6.105-201ENST00000637379 88 ntBASIC2.9□□□□□ -1.95
MSX2P35548 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.9□□□□□ -1.95
MSX2P35548 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
MSX2P35548 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.89□□□□□ -1.95
MSX2P35548 AC069528.2-201ENST00000624849 1991 ntBASIC2.89□□□□□ -1.95
MSX2P35548 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
MSX2P35548 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
MSX2P35548 RNU6-818P-201ENST00000364837 108 ntBASIC2.89□□□□□ -1.95
MSX2P35548 RNU6-275P-201ENST00000364910 107 ntBASIC2.89□□□□□ -1.95
MSX2P35548 SNORA72.4-201ENST00000384174 132 ntBASIC2.89□□□□□ -1.95
MSX2P35548 Y_RNA.568-201ENST00000384742 113 ntBASIC2.89□□□□□ -1.95
MSX2P35548 RNVU1-14-201ENST00000384770 164 ntBASIC2.89□□□□□ -1.95
MSX2P35548 AL162725.1-201ENST00000435405 301 ntBASIC2.89□□□□□ -1.95
MSX2P35548 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.89□□□□□ -1.95
MSX2P35548 RNA5SP76-201ENST00000516277 87 ntBASIC2.89□□□□□ -1.95
MSX2P35548 SCARNA11.3-201ENST00000517276 130 ntBASIC2.89□□□□□ -1.95
MSX2P35548 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.89□□□□□ -1.95
MSX2P35548 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC2.89□□□□□ -1.95
MSX2P35548 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC2.89□□□□□ -1.95
MSX2P35548 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC2.89□□□□□ -1.95
MSX2P35548 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.89□□□□□ -1.95
MSX2P35548 AC010329.5-201ENST00000623497 2174 ntBASIC2.89□□□□□ -1.95
MSX2P35548 AC138915.1-201ENST00000565427 1685 ntBASIC2.88□□□□□ -1.95
MSX2P35548 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
MSX2P35548 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC2.88□□□□□ -1.95
MSX2P35548 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
MSX2P35548 snoU2_19.1-201ENST00000362361 80 ntBASIC2.88□□□□□ -1.95
MSX2P35548 U3.8-201ENST00000363675 217 ntBASIC2.88□□□□□ -1.95
MSX2P35548 snoU2_19.4-201ENST00000364329 80 ntBASIC2.88□□□□□ -1.95
MSX2P35548 Y_RNA.497-201ENST00000384447 98 ntBASIC2.88□□□□□ -1.95
MSX2P35548 RNU6-1117P-201ENST00000384525 104 ntBASIC2.88□□□□□ -1.95
MSX2P35548 SNORA12-201ENST00000391162 147 ntBASIC2.88□□□□□ -1.95
MSX2P35548 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC2.88□□□□□ -1.95
MSX2P35548 RPL27AP5-201ENST00000469428 449 ntBASIC2.88□□□□□ -1.95
MSX2P35548 SNORD116-25-201ENST00000516517 92 ntBASIC2.88□□□□□ -1.95
MSX2P35548 RNU6-56P-201ENST00000516986 93 ntBASIC2.88□□□□□ -1.95
MSX2P35548 AC026241.1-201ENST00000517873 2142 ntBASIC2.88□□□□□ -1.95
MSX2P35548 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.88□□□□□ -1.95
MSX2P35548 MIR7975-201ENST00000619350 68 ntBASIC2.88□□□□□ -1.95
MSX2P35548 U6.115-201ENST00000636045 103 ntBASIC2.88□□□□□ -1.95
MSX2P35548 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
MSX2P35548 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
MSX2P35548 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
MSX2P35548 RNU6-1048P-201ENST00000364054 107 ntBASIC2.87□□□□□ -1.95
MSX2P35548 Y_RNA.215-201ENST00000364204 112 ntBASIC2.87□□□□□ -1.95
MSX2P35548 Y_RNA.287-201ENST00000364853 94 ntBASIC2.87□□□□□ -1.95
MSX2P35548 Y_RNA.343-201ENST00000365354 112 ntBASIC2.87□□□□□ -1.95
MSX2P35548 Y_RNA.368-201ENST00000365547 113 ntBASIC2.87□□□□□ -1.95
MSX2P35548 Y_RNA.488-201ENST00000384403 102 ntBASIC2.87□□□□□ -1.95
MSX2P35548 MIR490-201ENST00000384865 128 ntBASIC2.87□□□□□ -1.95
MSX2P35548 AL513477.1-202ENST00000417061 214 ntBASIC2.87□□□□□ -1.95
MSX2P35548 RPS20P10-201ENST00000451209 253 ntBASIC2.87□□□□□ -1.95
MSX2P35548 RN7SKP164-201ENST00000516138 266 ntBASIC2.87□□□□□ -1.95
MSX2P35548 AC021269.2-201ENST00000532318 330 ntBASIC2.87□□□□□ -1.95
MSX2P35548 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC2.87□□□□□ -1.95
MSX2P35548 MIR5195-201ENST00000583555 115 ntBASIC2.87□□□□□ -1.95
MSX2P35548 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.87□□□□□ -1.95
MSX2P35548 MIR7515-201ENST00000637837 67 ntBASIC2.87□□□□□ -1.95
MSX2P35548 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.87□□□□□ -1.95
MSX2P35548 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.87□□□□□ -1.95
MSX2P35548 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
MSX2P35548 AC134026.1-201ENST00000623249 2239 ntBASIC2.87□□□□□ -1.95
MSX2P35548 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
MSX2P35548 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC2.86□□□□□ -1.95
MSX2P35548 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.86□□□□□ -1.95
MSX2P35548 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
MSX2P35548 RNU4-10P-201ENST00000364383 140 ntBASIC2.86□□□□□ -1.95
MSX2P35548 Y_RNA.310-201ENST00000365063 113 ntBASIC2.86□□□□□ -1.95
MSX2P35548 Y_RNA.357-201ENST00000365487 109 ntBASIC2.86□□□□□ -1.95
MSX2P35548 RNU6-959P-201ENST00000384671 107 ntBASIC2.86□□□□□ -1.95
MSX2P35548 MIR181A2-201ENST00000384863 110 ntBASIC2.86□□□□□ -1.95
MSX2P35548 MIR626-201ENST00000385032 94 ntBASIC2.86□□□□□ -1.95
MSX2P35548 MIR548B-201ENST00000385247 97 ntBASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 138.7 ms