Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC073544.1-201ENST00000600110 1595 ntBASIC2.19□□□□□ -2.06
HOXC9P31274 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.18□□□□□ -2.06
HOXC9P31274 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
HOXC9P31274 RNU6-727P-201ENST00000363592 107 ntBASIC2.18□□□□□ -2.06
HOXC9P31274 SNORD115-8-201ENST00000363856 82 ntBASIC2.18□□□□□ -2.06
HOXC9P31274 SNORD115-38-201ENST00000365037 82 ntBASIC2.18□□□□□ -2.06
HOXC9P31274 RNU6-438P-201ENST00000365561 103 ntBASIC2.18□□□□□ -2.06
HOXC9P31274 RNU6-611P-201ENST00000384276 104 ntBASIC2.18□□□□□ -2.06
HOXC9P31274 MIR10B-201ENST00000385011 110 ntBASIC2.18□□□□□ -2.06
HOXC9P31274 SNORA69.1-201ENST00000390904 137 ntBASIC2.18□□□□□ -2.06
HOXC9P31274 RNU6-159P-201ENST00000391080 106 ntBASIC2.18□□□□□ -2.06
HOXC9P31274 SUMO2P12-201ENST00000405924 140 ntBASIC2.18□□□□□ -2.06
HOXC9P31274 Y_RNA.605-201ENST00000410577 105 ntBASIC2.18□□□□□ -2.06
HOXC9P31274 AC096644.2-201ENST00000429278 159 ntBASIC2.18□□□□□ -2.06
HOXC9P31274 HMGN2P18-201ENST00000450680 270 ntBASIC2.18□□□□□ -2.06
HOXC9P31274 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC2.18□□□□□ -2.06
HOXC9P31274 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.18□□□□□ -2.06
HOXC9P31274 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC2.18□□□□□ -2.06
HOXC9P31274 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.18□□□□□ -2.06
HOXC9P31274 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.18□□□□□ -2.06
HOXC9P31274 MYL12BP1-201ENST00000569826 507 ntBASIC2.18□□□□□ -2.06
HOXC9P31274 AL080274.1-201ENST00000605565 220 ntBASIC2.18□□□□□ -2.06
HOXC9P31274 MIR6895-201ENST00000613497 78 ntBASIC2.18□□□□□ -2.06
HOXC9P31274 AC005296.1-201ENST00000616145 209 ntBASIC2.18□□□□□ -2.06
HOXC9P31274 AC012640.5-201ENST00000623897 319 ntBASIC2.18□□□□□ -2.06
HOXC9P31274 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
HOXC9P31274 MTND4P1-201ENST00000457501 1466 ntBASIC2.18□□□□□ -2.06
HOXC9P31274 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.18□□□□□ -2.06
HOXC9P31274 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.17□□□□□ -2.06
HOXC9P31274 RNU1-76P-201ENST00000362903 159 ntBASIC2.17□□□□□ -2.06
HOXC9P31274 RNU6-879P-201ENST00000364328 108 ntBASIC2.17□□□□□ -2.06
HOXC9P31274 Y_RNA.428-201ENST00000384078 102 ntBASIC2.17□□□□□ -2.06
HOXC9P31274 Y_RNA.557-201ENST00000384680 107 ntBASIC2.17□□□□□ -2.06
HOXC9P31274 EDDM3CP-201ENST00000415977 425 ntBASIC2.17□□□□□ -2.06
HOXC9P31274 CEP57L1P1-201ENST00000430943 1201 ntBASIC2.17□□□□□ -2.06
HOXC9P31274 AC099799.1-201ENST00000439809 192 ntBASIC2.17□□□□□ -2.06
HOXC9P31274 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.17□□□□□ -2.06
HOXC9P31274 AC093259.1-201ENST00000509755 300 ntBASIC2.17□□□□□ -2.06
HOXC9P31274 RNU6-1114P-201ENST00000516022 107 ntBASIC2.17□□□□□ -2.06
HOXC9P31274 RNA5SP82-201ENST00000516707 92 ntBASIC2.17□□□□□ -2.06
HOXC9P31274 RNU7-4P-201ENST00000516961 62 ntBASIC2.17□□□□□ -2.06
HOXC9P31274 SNORD116.3-201ENST00000517176 78 ntBASIC2.17□□□□□ -2.06
HOXC9P31274 AC022868.1-201ENST00000517767 391 ntBASIC2.17□□□□□ -2.06
HOXC9P31274 NDUFA5P6-201ENST00000542110 379 ntBASIC2.17□□□□□ -2.06
HOXC9P31274 AC090617.3-201ENST00000573670 475 ntBASIC2.17□□□□□ -2.06
HOXC9P31274 MIR3618-201ENST00000580330 88 ntBASIC2.17□□□□□ -2.06
HOXC9P31274 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.17□□□□□ -2.06
HOXC9P31274 AC087588.2-201ENST00000617667 426 ntBASIC2.17□□□□□ -2.06
HOXC9P31274 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.17□□□□□ -2.06
HOXC9P31274 AC245060.5-201ENST00000610778 3293 ntBASIC2.16□□□□□ -2.06
HOXC9P31274 RNU6-545P-201ENST00000362681 104 ntBASIC2.16□□□□□ -2.06
HOXC9P31274 Y_RNA.197-201ENST00000364004 102 ntBASIC2.16□□□□□ -2.06
HOXC9P31274 RNU6-280P-201ENST00000364145 104 ntBASIC2.16□□□□□ -2.06
HOXC9P31274 RNU6-60P-201ENST00000364792 103 ntBASIC2.16□□□□□ -2.06
HOXC9P31274 RNU6-308P-201ENST00000390957 107 ntBASIC2.16□□□□□ -2.06
HOXC9P31274 AL033519.2-201ENST00000403958 392 ntBASIC2.16□□□□□ -2.06
HOXC9P31274 RPS20P15-201ENST00000412792 311 ntBASIC2.16□□□□□ -2.06
HOXC9P31274 AC114482.1-201ENST00000418010 247 ntBASIC2.16□□□□□ -2.06
HOXC9P31274 MTND4P28-201ENST00000426217 387 ntBASIC2.16□□□□□ -2.06
HOXC9P31274 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.16□□□□□ -2.06
HOXC9P31274 AC009237.7-201ENST00000447357 229 ntBASIC2.16□□□□□ -2.06
HOXC9P31274 AL137159.1-201ENST00000452808 512 ntBASIC2.16□□□□□ -2.06
HOXC9P31274 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC2.16□□□□□ -2.06
HOXC9P31274 RNU6-976P-201ENST00000516086 111 ntBASIC2.16□□□□□ -2.06
HOXC9P31274 AC093023.1-201ENST00000547375 507 ntBASIC2.16□□□□□ -2.06
HOXC9P31274 AC233702.2-202ENST00000562547 291 ntBASIC2.16□□□□□ -2.06
HOXC9P31274 AL031274.2-201ENST00000599419 203 ntBASIC2.16□□□□□ -2.06
HOXC9P31274 CYP2C61P-201ENST00000604072 290 ntBASIC2.16□□□□□ -2.06
HOXC9P31274 RPL17P51-201ENST00000605218 238 ntBASIC2.16□□□□□ -2.06
HOXC9P31274 AL512598.1-201ENST00000610158 273 ntBASIC2.16□□□□□ -2.06
HOXC9P31274 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.16□□□□□ -2.06
HOXC9P31274 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
HOXC9P31274 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.15□□□□□ -2.07
HOXC9P31274 Y_RNA.5-201ENST00000362334 102 ntBASIC2.15□□□□□ -2.07
HOXC9P31274 RNU6-137P-201ENST00000363680 108 ntBASIC2.15□□□□□ -2.07
HOXC9P31274 RNU1-42P-201ENST00000364033 160 ntBASIC2.15□□□□□ -2.07
HOXC9P31274 RNU6-245P-201ENST00000384020 107 ntBASIC2.15□□□□□ -2.07
HOXC9P31274 Y_RNA.445-201ENST00000384168 102 ntBASIC2.15□□□□□ -2.07
HOXC9P31274 RNU1-139P-201ENST00000391307 165 ntBASIC2.15□□□□□ -2.07
HOXC9P31274 SNORD23.1-201ENST00000408212 104 ntBASIC2.15□□□□□ -2.07
HOXC9P31274 MIR1262-201ENST00000408276 93 ntBASIC2.15□□□□□ -2.07
HOXC9P31274 RNU6-1001P-201ENST00000411265 100 ntBASIC2.15□□□□□ -2.07
HOXC9P31274 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.15□□□□□ -2.07
HOXC9P31274 HMGN2P19-201ENST00000425149 265 ntBASIC2.15□□□□□ -2.07
HOXC9P31274 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.15□□□□□ -2.07
HOXC9P31274 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.15□□□□□ -2.07
HOXC9P31274 AL163540.1-201ENST00000485382 386 ntBASIC2.15□□□□□ -2.07
HOXC9P31274 TRMT112P2-201ENST00000512910 132 ntBASIC2.15□□□□□ -2.07
HOXC9P31274 AC144568.1-201ENST00000520139 137 ntBASIC2.15□□□□□ -2.07
HOXC9P31274 AC026271.5-201ENST00000577873 130 ntBASIC2.15□□□□□ -2.07
HOXC9P31274 SNRPGP17-201ENST00000603780 214 ntBASIC2.15□□□□□ -2.07
HOXC9P31274 MPP6-209ENST00000625307 126 ntTSL 5 BASIC2.15□□□□□ -2.07
HOXC9P31274 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC2.15□□□□□ -2.07
HOXC9P31274 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.14□□□□□ -2.07
HOXC9P31274 RNA5SP361-201ENST00000362686 118 ntBASIC2.14□□□□□ -2.07
HOXC9P31274 Y_RNA.138-201ENST00000363462 102 ntBASIC2.14□□□□□ -2.07
HOXC9P31274 SNORA6-201ENST00000384033 151 ntBASIC2.14□□□□□ -2.07
HOXC9P31274 Y_RNA.496-201ENST00000384444 101 ntBASIC2.14□□□□□ -2.07
HOXC9P31274 Y_RNA.592-201ENST00000410274 109 ntBASIC2.14□□□□□ -2.07
HOXC9P31274 MTCO2P12-201ENST00000427426 682 ntBASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms