Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC008155.2-201ENST00000464337 397 ntBASIC3.54□□□□□ -1.84
COL8A1P27658 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC3.54□□□□□ -1.84
COL8A1P27658 AC087499.8-201ENST00000578406 226 ntBASIC3.54□□□□□ -1.84
COL8A1P27658 MIR5197-201ENST00000583721 112 ntBASIC3.54□□□□□ -1.84
COL8A1P27658 AC091905.2-201ENST00000623143 306 ntBASIC3.54□□□□□ -1.84
COL8A1P27658 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
COL8A1P27658 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.54□□□□□ -1.84
COL8A1P27658 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL8A1P27658 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL8A1P27658 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC3.53□□□□□ -1.84
COL8A1P27658 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.53□□□□□ -1.84
COL8A1P27658 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC3.53□□□□□ -1.84
COL8A1P27658 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.53□□□□□ -1.84
COL8A1P27658 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.53□□□□□ -1.84
COL8A1P27658 SNORA33-201ENST00000363664 130 ntBASIC3.53□□□□□ -1.84
COL8A1P27658 RNU6-944P-201ENST00000364023 107 ntBASIC3.53□□□□□ -1.84
COL8A1P27658 SNORA12-201ENST00000391162 147 ntBASIC3.53□□□□□ -1.84
COL8A1P27658 S100A11P1-201ENST00000477525 312 ntBASIC3.53□□□□□ -1.84
COL8A1P27658 AC106707.2-201ENST00000484182 374 ntBASIC3.53□□□□□ -1.84
COL8A1P27658 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.53□□□□□ -1.84
COL8A1P27658 PPBPP1-201ENST00000510807 373 ntBASIC3.53□□□□□ -1.84
COL8A1P27658 MRPS17P9-201ENST00000511924 393 ntBASIC3.53□□□□□ -1.84
COL8A1P27658 AC109329.2-201ENST00000519658 482 ntBASIC3.53□□□□□ -1.84
COL8A1P27658 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC3.53□□□□□ -1.84
COL8A1P27658 AC011604.1-201ENST00000545978 196 ntBASIC3.53□□□□□ -1.84
COL8A1P27658 RPL23AP97-201ENST00000568955 471 ntBASIC3.53□□□□□ -1.84
COL8A1P27658 AC012493.2-201ENST00000595083 291 ntBASIC3.53□□□□□ -1.84
COL8A1P27658 MIR7154-201ENST00000620673 73 ntBASIC3.53□□□□□ -1.84
COL8A1P27658 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL8A1P27658 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL8A1P27658 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.53□□□□□ -1.84
COL8A1P27658 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.53□□□□□ -1.84
COL8A1P27658 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL8A1P27658 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.85
COL8A1P27658 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.53□□□□□ -1.85
COL8A1P27658 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.85
COL8A1P27658 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.52□□□□□ -1.85
COL8A1P27658 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.52□□□□□ -1.85
COL8A1P27658 MIR448-201ENST00000362131 111 ntBASIC3.52□□□□□ -1.85
COL8A1P27658 RNU6-349P-201ENST00000362402 107 ntBASIC3.52□□□□□ -1.85
COL8A1P27658 RNU6-655P-201ENST00000362858 107 ntBASIC3.52□□□□□ -1.85
COL8A1P27658 RNY1P6-201ENST00000384193 109 ntBASIC3.52□□□□□ -1.85
COL8A1P27658 RNU6-750P-201ENST00000390946 107 ntBASIC3.52□□□□□ -1.85
COL8A1P27658 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC3.52□□□□□ -1.85
COL8A1P27658 RNU5F-4P-201ENST00000516581 114 ntBASIC3.52□□□□□ -1.85
COL8A1P27658 RNU6-1098P-201ENST00000516772 96 ntBASIC3.52□□□□□ -1.85
COL8A1P27658 RN7SKP282-201ENST00000516824 299 ntBASIC3.52□□□□□ -1.85
COL8A1P27658 SNORD19.2-201ENST00000516978 73 ntBASIC3.52□□□□□ -1.85
COL8A1P27658 MIR4753-201ENST00000585119 83 ntBASIC3.52□□□□□ -1.85
COL8A1P27658 AC244505.7-201ENST00000599675 272 ntBASIC3.52□□□□□ -1.85
COL8A1P27658 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.52□□□□□ -1.85
COL8A1P27658 FAM35CP-201ENST00000554755 2470 ntBASIC3.52□□□□□ -1.85
COL8A1P27658 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL8A1P27658 SUPT16HP1-201ENST00000537175 3133 ntBASIC3.51□□□□□ -1.85
COL8A1P27658 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
COL8A1P27658 AC010733.2-201ENST00000589496 5702 ntBASIC3.51□□□□□ -1.85
COL8A1P27658 RNU6-170P-201ENST00000362832 104 ntBASIC3.51□□□□□ -1.85
COL8A1P27658 Y_RNA.96-201ENST00000363092 109 ntBASIC3.51□□□□□ -1.85
COL8A1P27658 RNU6-219P-201ENST00000364728 107 ntBASIC3.51□□□□□ -1.85
COL8A1P27658 RNU6-1104P-201ENST00000384723 104 ntBASIC3.51□□□□□ -1.85
COL8A1P27658 U8.17-201ENST00000391292 132 ntBASIC3.51□□□□□ -1.85
COL8A1P27658 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.51□□□□□ -1.85
COL8A1P27658 AL441985.1-201ENST00000457727 251 ntBASIC3.51□□□□□ -1.85
COL8A1P27658 NDUFA4P2-201ENST00000489989 244 ntBASIC3.51□□□□□ -1.85
COL8A1P27658 RNU6-693P-201ENST00000516134 107 ntBASIC3.51□□□□□ -1.85
COL8A1P27658 RNU6-1073P-201ENST00000517182 106 ntBASIC3.51□□□□□ -1.85
COL8A1P27658 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.51□□□□□ -1.85
COL8A1P27658 AC091152.3-201ENST00000604227 325 ntBASIC3.51□□□□□ -1.85
COL8A1P27658 AC012531.4-201ENST00000616509 177 ntBASIC3.51□□□□□ -1.85
COL8A1P27658 AC007546.2-201ENST00000623996 360 ntBASIC3.51□□□□□ -1.85
COL8A1P27658 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
COL8A1P27658 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL8A1P27658 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
COL8A1P27658 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
COL8A1P27658 AC011266.1-201ENST00000624119 3569 ntBASIC3.5□□□□□ -1.85
COL8A1P27658 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
COL8A1P27658 SNORD115-35-201ENST00000365122 82 ntBASIC3.5□□□□□ -1.85
COL8A1P27658 RNA5SP151-201ENST00000365632 117 ntBASIC3.5□□□□□ -1.85
COL8A1P27658 RNU6-975P-201ENST00000384296 105 ntBASIC3.5□□□□□ -1.85
COL8A1P27658 MIR490-201ENST00000384865 128 ntBASIC3.5□□□□□ -1.85
COL8A1P27658 MIR548A2-201ENST00000384956 97 ntBASIC3.5□□□□□ -1.85
COL8A1P27658 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
COL8A1P27658 SNORA3.3-201ENST00000408712 125 ntBASIC3.5□□□□□ -1.85
COL8A1P27658 MRPL35P3-201ENST00000421557 364 ntBASIC3.5□□□□□ -1.85
COL8A1P27658 RPL30P4-201ENST00000429309 333 ntBASIC3.5□□□□□ -1.85
COL8A1P27658 RNU7-164P-201ENST00000459221 62 ntBASIC3.5□□□□□ -1.85
COL8A1P27658 RNA5SP446-201ENST00000515955 82 ntBASIC3.5□□□□□ -1.85
COL8A1P27658 RNU6-795P-201ENST00000516323 103 ntBASIC3.5□□□□□ -1.85
COL8A1P27658 RNU6-267P-201ENST00000516714 103 ntBASIC3.5□□□□□ -1.85
COL8A1P27658 RNA5SP179-201ENST00000517284 121 ntBASIC3.5□□□□□ -1.85
COL8A1P27658 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.5□□□□□ -1.85
COL8A1P27658 AC006064.5-201ENST00000541782 248 ntBASIC3.5□□□□□ -1.85
COL8A1P27658 AC011602.1-201ENST00000546484 331 ntBASIC3.5□□□□□ -1.85
COL8A1P27658 MIR4694-201ENST00000578534 80 ntBASIC3.5□□□□□ -1.85
COL8A1P27658 AC091167.4-201ENST00000605079 184 ntBASIC3.5□□□□□ -1.85
COL8A1P27658 MIR376A2-201ENST00000636782 80 ntBASIC3.5□□□□□ -1.85
COL8A1P27658 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL8A1P27658 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.5□□□□□ -1.85
COL8A1P27658 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL8A1P27658 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms