Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
NPHP4O75161 MIR3664-201ENST00000579074 99 ntBASIC0.89□□□□□ -2.27
NPHP4O75161 MIR4424-201ENST00000585257 86 ntBASIC0.89□□□□□ -2.27
NPHP4O75161 HSPE1P19-201ENST00000603327 295 ntBASIC0.89□□□□□ -2.27
NPHP4O75161 AC013244.2-201ENST00000603396 103 ntBASIC0.89□□□□□ -2.27
NPHP4O75161 AL357078.3-201ENST00000607528 618 ntBASIC0.89□□□□□ -2.27
NPHP4O75161 OR5AK4P-201ENST00000635912 903 ntBASIC0.89□□□□□ -2.27
NPHP4O75161 Y_RNA.378-201ENST00000365652 113 ntBASIC0.88□□□□□ -2.27
NPHP4O75161 RNA5SP323-201ENST00000391094 133 ntBASIC0.88□□□□□ -2.27
NPHP4O75161 AC016909.1-201ENST00000415916 166 ntBASIC0.88□□□□□ -2.27
NPHP4O75161 MTCO2P19-201ENST00000427513 598 ntBASIC0.88□□□□□ -2.27
NPHP4O75161 AL606489.2-201ENST00000433886 234 ntBASIC0.88□□□□□ -2.27
NPHP4O75161 AC005002.2-201ENST00000438228 269 ntBASIC0.88□□□□□ -2.27
NPHP4O75161 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.88□□□□□ -2.27
NPHP4O75161 RNU7-57P-201ENST00000459540 60 ntBASIC0.88□□□□□ -2.27
NPHP4O75161 RNU6-189P-201ENST00000516120 101 ntBASIC0.88□□□□□ -2.27
NPHP4O75161 RNU4ATAC8P-201ENST00000516196 109 ntBASIC0.88□□□□□ -2.27
NPHP4O75161 RNU2-34P-201ENST00000516534 121 ntBASIC0.88□□□□□ -2.27
NPHP4O75161 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.88□□□□□ -2.27
NPHP4O75161 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.88□□□□□ -2.27
NPHP4O75161 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.88□□□□□ -2.27
NPHP4O75161 AC092747.3-201ENST00000603769 301 ntBASIC0.88□□□□□ -2.27
NPHP4O75161 AC073114.1-201ENST00000612027 490 ntBASIC0.88□□□□□ -2.27
NPHP4O75161 AC021506.2-201ENST00000612354 169 ntBASIC0.88□□□□□ -2.27
NPHP4O75161 AC139792.3-201ENST00000623525 224 ntBASIC0.88□□□□□ -2.27
NPHP4O75161 FER-210ENST00000628534 558 ntTSL 5 BASIC0.88□□□□□ -2.27
NPHP4O75161 AC099654.5-201ENST00000636479 350 ntBASIC0.88□□□□□ -2.27
NPHP4O75161 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.88□□□□□ -2.27
NPHP4O75161 RNU6-534P-201ENST00000364877 106 ntBASIC0.87□□□□□ -2.27
NPHP4O75161 RNU6-1329P-201ENST00000365664 107 ntBASIC0.87□□□□□ -2.27
NPHP4O75161 RNU6-1286P-201ENST00000383871 107 ntBASIC0.87□□□□□ -2.27
NPHP4O75161 MIR146A-201ENST00000385201 99 ntBASIC0.87□□□□□ -2.27
NPHP4O75161 MIR1253-201ENST00000408273 105 ntBASIC0.87□□□□□ -2.27
NPHP4O75161 DYNLT3P2-201ENST00000442517 295 ntBASIC0.87□□□□□ -2.27
NPHP4O75161 AC009237.7-201ENST00000447357 229 ntBASIC0.87□□□□□ -2.27
NPHP4O75161 MTCO2P18-201ENST00000457151 658 ntBASIC0.87□□□□□ -2.27
NPHP4O75161 SRRM1P2-201ENST00000464531 1192 ntBASIC0.87□□□□□ -2.27
NPHP4O75161 AC010493.1-201ENST00000513479 292 ntBASIC0.87□□□□□ -2.27
NPHP4O75161 SNORA31.10-201ENST00000516482 106 ntBASIC0.87□□□□□ -2.27
NPHP4O75161 RNU6-229P-201ENST00000516614 102 ntBASIC0.87□□□□□ -2.27
NPHP4O75161 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
NPHP4O75161 RAB11AP2-201ENST00000545905 639 ntBASIC0.87□□□□□ -2.27
NPHP4O75161 AC004492.1-201ENST00000607036 742 ntBASIC0.87□□□□□ -2.27
NPHP4O75161 AC007684.1-201ENST00000609671 477 ntBASIC0.87□□□□□ -2.27
NPHP4O75161 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.86□□□□□ -2.27
NPHP4O75161 RNU6-968P-201ENST00000384076 107 ntBASIC0.86□□□□□ -2.27
NPHP4O75161 SNORD37.1-201ENST00000390968 65 ntBASIC0.86□□□□□ -2.27
NPHP4O75161 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC0.86□□□□□ -2.27
NPHP4O75161 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.86□□□□□ -2.27
NPHP4O75161 AC073464.1-201ENST00000429823 534 ntBASIC0.86□□□□□ -2.27
NPHP4O75161 HSPE1P13-201ENST00000451143 297 ntBASIC0.86□□□□□ -2.27
NPHP4O75161 RNU1-117P-201ENST00000517041 158 ntBASIC0.86□□□□□ -2.27
NPHP4O75161 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.86□□□□□ -2.27
NPHP4O75161 AC026470.2-201ENST00000561492 181 ntBASIC0.86□□□□□ -2.27
NPHP4O75161 MIR5692C1-201ENST00000585309 91 ntBASIC0.86□□□□□ -2.27
NPHP4O75161 AC087683.1-201ENST00000591187 441 ntBASIC0.86□□□□□ -2.27
NPHP4O75161 AC005609.4-201ENST00000625071 447 ntBASIC0.86□□□□□ -2.27
NPHP4O75161 ZNF204P-201ENST00000416749 2397 ntBASIC0.85□□□□□ -2.27
NPHP4O75161 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
NPHP4O75161 MIR521-1-201ENST00000384902 87 ntBASIC0.85□□□□□ -2.27
NPHP4O75161 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC0.85□□□□□ -2.27
NPHP4O75161 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.85□□□□□ -2.27
NPHP4O75161 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC0.85□□□□□ -2.27
NPHP4O75161 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC0.85□□□□□ -2.27
NPHP4O75161 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.85□□□□□ -2.27
NPHP4O75161 U8.21-201ENST00000459536 136 ntBASIC0.85□□□□□ -2.27
NPHP4O75161 AC114982.1-201ENST00000469402 321 ntBASIC0.85□□□□□ -2.27
NPHP4O75161 RNU6-165P-201ENST00000517170 99 ntBASIC0.85□□□□□ -2.27
NPHP4O75161 AC016256.1-201ENST00000547971 354 ntBASIC0.85□□□□□ -2.27
NPHP4O75161 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.85□□□□□ -2.27
NPHP4O75161 BX284668.6-201ENST00000606899 438 ntBASIC0.85□□□□□ -2.27
NPHP4O75161 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.85□□□□□ -2.27
NPHP4O75161 U6.108-201ENST00000637764 58 ntBASIC0.85□□□□□ -2.27
NPHP4O75161 Y_RNA.280-201ENST00000364765 112 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 Y_RNA.294-201ENST00000364916 102 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 SNORA72.2-201ENST00000365028 127 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 RNU4-66P-201ENST00000365199 138 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 RNU5A-6P-201ENST00000384136 116 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 SNORA67.2-201ENST00000384300 149 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 SNORA25-201ENST00000384384 134 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 RNY3P9-201ENST00000384727 106 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 RNU6-325P-201ENST00000411132 105 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 PGBD4P5-201ENST00000445958 426 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.84□□□□□ -2.27
NPHP4O75161 RNA5SP401-201ENST00000515920 127 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 RNU6-1146P-201ENST00000516282 102 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 MTND1P35-201ENST00000526739 508 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 SCOCP1-201ENST00000554676 349 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 AL157687.1-201ENST00000554853 619 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 AC145350.1-201ENST00000567426 208 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 FGF7P1-201ENST00000582820 288 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 AC022217.4-201ENST00000604389 163 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 AL022345.2-201ENST00000606307 135 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 AC109347.2-201ENST00000610220 349 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 AC103705.1-201ENST00000619013 241 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 AC068792.1-201ENST00000621354 417 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 SCARNA4-201ENST00000629045 128 ntBASIC0.84□□□□□ -2.27
NPHP4O75161 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.83□□□□□ -2.28
NPHP4O75161 RNU4-20P-201ENST00000365601 151 ntBASIC0.83□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms