Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RNU6-595P-201ENST00000363944 107 ntBASIC1.5□□□□□ -2.17
SDC3O75056 RNU6-593P-201ENST00000364716 112 ntBASIC1.5□□□□□ -2.17
SDC3O75056 RNU6-338P-201ENST00000383888 105 ntBASIC1.5□□□□□ -2.17
SDC3O75056 Y_RNA.533-201ENST00000384596 114 ntBASIC1.5□□□□□ -2.17
SDC3O75056 EBAG9P1-201ENST00000418955 543 ntBASIC1.5□□□□□ -2.17
SDC3O75056 RPL30P16-201ENST00000419341 429 ntBASIC1.5□□□□□ -2.17
SDC3O75056 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.5□□□□□ -2.17
SDC3O75056 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.5□□□□□ -2.17
SDC3O75056 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.5□□□□□ -2.17
SDC3O75056 snoU13.9-201ENST00000458927 103 ntBASIC1.5□□□□□ -2.17
SDC3O75056 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.5□□□□□ -2.17
SDC3O75056 AC011406.1-201ENST00000512440 370 ntBASIC1.5□□□□□ -2.17
SDC3O75056 AL161670.1-201ENST00000554348 137 ntBASIC1.5□□□□□ -2.17
SDC3O75056 AC069114.2-201ENST00000604699 304 ntBASIC1.5□□□□□ -2.17
SDC3O75056 SNORD11B-201ENST00000607707 90 ntBASIC1.5□□□□□ -2.17
SDC3O75056 AC092794.1-201ENST00000612734 582 ntBASIC1.5□□□□□ -2.17
SDC3O75056 MIR6128-201ENST00000615528 109 ntBASIC1.5□□□□□ -2.17
SDC3O75056 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC1.5□□□□□ -2.17
SDC3O75056 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.5□□□□□ -2.17
SDC3O75056 RNU6-862P-201ENST00000362804 105 ntBASIC1.49□□□□□ -2.17
SDC3O75056 SNORA7.1-201ENST00000363750 139 ntBASIC1.49□□□□□ -2.17
SDC3O75056 RNU5F-3P-201ENST00000363767 117 ntBASIC1.49□□□□□ -2.17
SDC3O75056 RNU4-13P-201ENST00000364019 141 ntBASIC1.49□□□□□ -2.17
SDC3O75056 RNU6-1305P-201ENST00000364353 104 ntBASIC1.49□□□□□ -2.17
SDC3O75056 SNORA25.9-201ENST00000365087 128 ntBASIC1.49□□□□□ -2.17
SDC3O75056 RNU6-842P-201ENST00000384269 107 ntBASIC1.49□□□□□ -2.17
SDC3O75056 MIR517C-201ENST00000385103 95 ntBASIC1.49□□□□□ -2.17
SDC3O75056 RNU6-159P-201ENST00000391080 106 ntBASIC1.49□□□□□ -2.17
SDC3O75056 MIR548K-201ENST00000408406 116 ntBASIC1.49□□□□□ -2.17
SDC3O75056 RNU6ATAC25P-201ENST00000408798 117 ntBASIC1.49□□□□□ -2.17
SDC3O75056 RNA5SP504-201ENST00000410676 117 ntBASIC1.49□□□□□ -2.17
SDC3O75056 CST2P1-201ENST00000425770 87 ntBASIC1.49□□□□□ -2.17
SDC3O75056 AL354695.1-201ENST00000427935 228 ntBASIC1.49□□□□□ -2.17
SDC3O75056 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.49□□□□□ -2.17
SDC3O75056 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.49□□□□□ -2.17
SDC3O75056 NDUFB4P10-201ENST00000452541 359 ntBASIC1.49□□□□□ -2.17
SDC3O75056 RPL36AP21-201ENST00000490372 323 ntBASIC1.49□□□□□ -2.17
SDC3O75056 RNU7-175P-201ENST00000515915 61 ntBASIC1.49□□□□□ -2.17
SDC3O75056 RNU6-1041P-201ENST00000516254 102 ntBASIC1.49□□□□□ -2.17
SDC3O75056 RNU6-970P-201ENST00000516312 107 ntBASIC1.49□□□□□ -2.17
SDC3O75056 Y_RNA.682-201ENST00000516457 100 ntBASIC1.49□□□□□ -2.17
SDC3O75056 RNA5SP384-201ENST00000516615 116 ntBASIC1.49□□□□□ -2.17
SDC3O75056 SNORA31.24-201ENST00000517232 57 ntBASIC1.49□□□□□ -2.17
SDC3O75056 MTND4LP26-201ENST00000518144 282 ntBASIC1.49□□□□□ -2.17
SDC3O75056 AC134698.4-201ENST00000523451 826 ntBASIC1.49□□□□□ -2.17
SDC3O75056 AL590705.4-201ENST00000532209 134 ntBASIC1.49□□□□□ -2.17
SDC3O75056 AL157834.3-201ENST00000615543 103 ntBASIC1.49□□□□□ -2.17
SDC3O75056 U6atac.1-201ENST00000616025 117 ntBASIC1.49□□□□□ -2.17
SDC3O75056 AL078596.1-201ENST00000624856 447 ntBASIC1.49□□□□□ -2.17
SDC3O75056 AL133216.2-202ENST00000634512 349 ntBASIC1.49□□□□□ -2.17
SDC3O75056 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.49□□□□□ -2.17
SDC3O75056 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.48□□□□□ -2.17
SDC3O75056 ZNF209P-201ENST00000593450 2304 ntBASIC1.48□□□□□ -2.17
SDC3O75056 RNU6-1059P-201ENST00000363752 98 ntBASIC1.48□□□□□ -2.17
SDC3O75056 RNU6-1019P-201ENST00000364424 107 ntBASIC1.48□□□□□ -2.17
SDC3O75056 MIR520A-201ENST00000384862 85 ntBASIC1.48□□□□□ -2.17
SDC3O75056 MIR499A-201ENST00000384903 122 ntBASIC1.48□□□□□ -2.17
SDC3O75056 MIR1267-201ENST00000408723 78 ntBASIC1.48□□□□□ -2.17
SDC3O75056 Y_RNA.599-201ENST00000410489 109 ntBASIC1.48□□□□□ -2.17
SDC3O75056 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.48□□□□□ -2.17
SDC3O75056 AC245047.4-201ENST00000433189 144 ntBASIC1.48□□□□□ -2.17
SDC3O75056 AC016717.1-201ENST00000448918 286 ntBASIC1.48□□□□□ -2.17
SDC3O75056 RNU7-57P-201ENST00000459540 60 ntBASIC1.48□□□□□ -2.17
SDC3O75056 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.48□□□□□ -2.17
SDC3O75056 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.48□□□□□ -2.17
SDC3O75056 AC046134.1-201ENST00000514454 666 ntBASIC1.48□□□□□ -2.17
SDC3O75056 SNORA25.14-201ENST00000516481 132 ntBASIC1.48□□□□□ -2.17
SDC3O75056 MIR4421-201ENST00000578133 69 ntBASIC1.48□□□□□ -2.17
SDC3O75056 AC018462.2-201ENST00000605375 395 ntBASIC1.48□□□□□ -2.17
SDC3O75056 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.48□□□□□ -2.17
SDC3O75056 MIR338-201ENST00000636369 67 ntBASIC1.48□□□□□ -2.17
SDC3O75056 AC068205.3-201ENST00000636385 468 ntBASIC1.48□□□□□ -2.17
SDC3O75056 WWP1P1-201ENST00000466609 2769 ntBASIC1.47□□□□□ -2.17
SDC3O75056 MTND4P12-201ENST00000498999 1377 ntBASIC1.47□□□□□ -2.17
SDC3O75056 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
SDC3O75056 AC010615.1-201ENST00000594254 1764 ntBASIC1.47□□□□□ -2.17
SDC3O75056 Y_RNA.67-201ENST00000362870 100 ntBASIC1.47□□□□□ -2.17
SDC3O75056 RNU6-873P-201ENST00000363833 107 ntBASIC1.47□□□□□ -2.17
SDC3O75056 RNU6-280P-201ENST00000364145 104 ntBASIC1.47□□□□□ -2.17
SDC3O75056 RNU1-96P-201ENST00000364163 162 ntBASIC1.47□□□□□ -2.17
SDC3O75056 Y_RNA.339-201ENST00000365325 102 ntBASIC1.47□□□□□ -2.17
SDC3O75056 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
SDC3O75056 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
SDC3O75056 Y_RNA.619-201ENST00000410951 90 ntBASIC1.47□□□□□ -2.17
SDC3O75056 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.47□□□□□ -2.17
SDC3O75056 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.47□□□□□ -2.17
SDC3O75056 AC018710.1-201ENST00000506509 158 ntBASIC1.47□□□□□ -2.17
SDC3O75056 AC026782.1-201ENST00000512952 449 ntBASIC1.47□□□□□ -2.17
SDC3O75056 RNU6-1016P-201ENST00000516689 94 ntBASIC1.47□□□□□ -2.17
SDC3O75056 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
SDC3O75056 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.47□□□□□ -2.17
SDC3O75056 AC011712.1-201ENST00000588959 234 ntBASIC1.47□□□□□ -2.17
SDC3O75056 AC122108.2-201ENST00000611946 526 ntBASIC1.47□□□□□ -2.17
SDC3O75056 AC084782.3-201ENST00000612282 578 ntBASIC1.47□□□□□ -2.17
SDC3O75056 MIR7111-201ENST00000619751 72 ntBASIC1.47□□□□□ -2.17
SDC3O75056 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.47□□□□□ -2.17
SDC3O75056 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
SDC3O75056 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
SDC3O75056 snoU2-30.2-201ENST00000362805 70 ntBASIC1.46□□□□□ -2.18
SDC3O75056 SNORA63D-201ENST00000364359 132 ntBASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 177.8 ms