Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.15□□□□□ -2.07
LMX1BO60663 AL135786.1-201ENST00000415892 214 ntBASIC2.15□□□□□ -2.07
LMX1BO60663 AC097463.2-201ENST00000421074 142 ntBASIC2.15□□□□□ -2.07
LMX1BO60663 AC145146.1-201ENST00000496370 254 ntBASIC2.15□□□□□ -2.07
LMX1BO60663 MRPS36P2-201ENST00000512569 299 ntBASIC2.15□□□□□ -2.07
LMX1BO60663 Y_RNA.683-201ENST00000516508 93 ntBASIC2.15□□□□□ -2.07
LMX1BO60663 EIF4A1P12-201ENST00000551910 141 ntBASIC2.15□□□□□ -2.07
LMX1BO60663 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.15□□□□□ -2.07
LMX1BO60663 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.15□□□□□ -2.07
LMX1BO60663 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.15□□□□□ -2.07
LMX1BO60663 U4.3-201ENST00000621047 82 ntBASIC2.15□□□□□ -2.07
LMX1BO60663 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.15□□□□□ -2.07
LMX1BO60663 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.15□□□□□ -2.07
LMX1BO60663 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.15□□□□□ -2.07
LMX1BO60663 AP006437.1-201ENST00000641440 3685 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 MIR21-201ENST00000362134 72 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 snoU2_19.1-201ENST00000362361 80 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 RNU1-62P-201ENST00000362599 164 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 Y_RNA.101-201ENST00000363154 102 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 Y_RNA.179-201ENST00000363844 90 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 RNY1-201ENST00000364228 113 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 Y_RNA.352-201ENST00000365439 102 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 RNU6-793P-201ENST00000384233 104 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 SNORA67.2-201ENST00000384300 149 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 Y_RNA.552-201ENST00000384665 112 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 MIR767-201ENST00000390228 109 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
LMX1BO60663 SNORA12-201ENST00000391162 147 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 Y_RNA.595-201ENST00000410403 105 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 RNU2-64P-201ENST00000411315 191 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 AL513477.1-202ENST00000417061 214 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 Z98742.3-201ENST00000418637 326 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.14□□□□□ -2.07
LMX1BO60663 RPS12P2-201ENST00000439728 269 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 snoU13.15-201ENST00000459407 104 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.14□□□□□ -2.07
LMX1BO60663 RAC1P5-201ENST00000512182 576 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 SERF1AP1-201ENST00000514575 187 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 RNA5SP320-201ENST00000516263 124 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 RPPH1-2P-201ENST00000516688 293 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 SNORA31.15-201ENST00000516771 132 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 SCARNA24.2-201ENST00000516968 130 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.14□□□□□ -2.07
LMX1BO60663 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.14□□□□□ -2.07
LMX1BO60663 AC018448.1-201ENST00000552843 316 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 AC007336.1-201ENST00000576365 3828 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 MIR4769-201ENST00000584126 77 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 SNORD113-5-201ENST00000607261 78 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.14□□□□□ -2.07
LMX1BO60663 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
LMX1BO60663 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
LMX1BO60663 RNU4-90P-201ENST00000362773 141 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 SNORD27-201ENST00000363981 72 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 Y_RNA.230-201ENST00000364348 109 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 SNORD32B-201ENST00000364460 84 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 Y_RNA.277-201ENST00000364754 102 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 RNU6-1175P-201ENST00000365200 107 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 Y_RNA.418-201ENST00000384029 102 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 MIR27B-201ENST00000385129 97 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 MIR548H3-201ENST00000408771 118 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 RNU5A-5P-201ENST00000411054 116 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 AC009963.1-201ENST00000417265 157 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.13□□□□□ -2.07
LMX1BO60663 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.13□□□□□ -2.07
LMX1BO60663 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.13□□□□□ -2.07
LMX1BO60663 IFNA11P-201ENST00000446352 526 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 RPL23AP3-201ENST00000453844 468 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 RPL31P41-201ENST00000477967 372 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 SEPT14P8-201ENST00000508026 178 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.13□□□□□ -2.07
LMX1BO60663 AC074133.1-201ENST00000515696 183 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 SCARNA11.3-201ENST00000517276 130 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.13□□□□□ -2.07
LMX1BO60663 AC109329.2-201ENST00000519658 482 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.13□□□□□ -2.07
LMX1BO60663 AC009779.6-201ENST00000603972 165 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 AC022441.3-201ENST00000605737 136 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 UCA1.1-201ENST00000620952 75 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.13□□□□□ -2.07
LMX1BO60663 AL359854.1-201ENST00000614203 1594 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 AC135776.4-201ENST00000624300 1904 ntBASIC2.13□□□□□ -2.07
LMX1BO60663 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.12□□□□□ -2.07
LMX1BO60663 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
LMX1BO60663 MIR410-201ENST00000362222 80 ntBASIC2.12□□□□□ -2.07
LMX1BO60663 RNU6-1266P-201ENST00000362794 105 ntBASIC2.12□□□□□ -2.07
LMX1BO60663 RNU6-727P-201ENST00000363592 107 ntBASIC2.12□□□□□ -2.07
LMX1BO60663 U3.9-201ENST00000363823 204 ntBASIC2.12□□□□□ -2.07
LMX1BO60663 RNA5SP456-201ENST00000364002 114 ntBASIC2.12□□□□□ -2.07
LMX1BO60663 RNU4-56P-201ENST00000364700 142 ntBASIC2.12□□□□□ -2.07
LMX1BO60663 Y_RNA.415-201ENST00000384012 112 ntBASIC2.12□□□□□ -2.07
LMX1BO60663 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
LMX1BO60663 RNA5SP354-201ENST00000391247 136 ntBASIC2.12□□□□□ -2.07
LMX1BO60663 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
LMX1BO60663 RAB28P5-201ENST00000427490 651 ntBASIC2.12□□□□□ -2.07
LMX1BO60663 AC027124.2-201ENST00000428249 105 ntBASIC2.12□□□□□ -2.07
LMX1BO60663 SUMO1P4-201ENST00000429430 302 ntBASIC2.12□□□□□ -2.07
LMX1BO60663 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.12□□□□□ -2.07
LMX1BO60663 Z98949.2-201ENST00000440996 144 ntBASIC2.12□□□□□ -2.07
LMX1BO60663 AC004386.2-201ENST00000441858 148 ntBASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms