Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 SNORD87-201ENST00000364849 89 ntBASIC2.04□□□□□ -2.08
PRKNO60260 SNORA63.7-201ENST00000365579 123 ntBASIC2.04□□□□□ -2.08
PRKNO60260 Y_RNA.415-201ENST00000384012 112 ntBASIC2.04□□□□□ -2.08
PRKNO60260 SNORA64-201ENST00000384674 134 ntBASIC2.04□□□□□ -2.08
PRKNO60260 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
PRKNO60260 RNU6-130P-201ENST00000411112 103 ntBASIC2.04□□□□□ -2.08
PRKNO60260 MTCYBP9-201ENST00000431021 303 ntBASIC2.04□□□□□ -2.08
PRKNO60260 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.04□□□□□ -2.08
PRKNO60260 UQCRBP2-201ENST00000447827 297 ntBASIC2.04□□□□□ -2.08
PRKNO60260 FCF1P4-201ENST00000448326 183 ntBASIC2.04□□□□□ -2.08
PRKNO60260 RNU7-14P-201ENST00000459331 62 ntBASIC2.04□□□□□ -2.08
PRKNO60260 RPS29P21-201ENST00000496272 170 ntBASIC2.04□□□□□ -2.08
PRKNO60260 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.04□□□□□ -2.08
PRKNO60260 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.04□□□□□ -2.08
PRKNO60260 MYL12BP1-201ENST00000569826 507 ntBASIC2.04□□□□□ -2.08
PRKNO60260 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.04□□□□□ -2.08
PRKNO60260 MIR1273D-201ENST00000577266 86 ntBASIC2.04□□□□□ -2.08
PRKNO60260 AL021879.1-201ENST00000611756 288 ntBASIC2.04□□□□□ -2.08
PRKNO60260 7SK.10-201ENST00000621414 298 ntBASIC2.04□□□□□ -2.08
PRKNO60260 MIR6873-201ENST00000622788 63 ntBASIC2.04□□□□□ -2.08
PRKNO60260 TTK-211ENST00000627129 240 ntTSL 5 BASIC2.04□□□□□ -2.08
PRKNO60260 MIR1248-201ENST00000629190 106 ntBASIC2.04□□□□□ -2.08
PRKNO60260 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.03□□□□□ -2.08
PRKNO60260 Y_RNA.152-201ENST00000363578 100 ntBASIC2.03□□□□□ -2.08
PRKNO60260 RNU6-463P-201ENST00000384340 107 ntBASIC2.03□□□□□ -2.08
PRKNO60260 MIR568-201ENST00000385036 95 ntBASIC2.03□□□□□ -2.08
PRKNO60260 AL135786.1-201ENST00000415892 214 ntBASIC2.03□□□□□ -2.08
PRKNO60260 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.03□□□□□ -2.08
PRKNO60260 AC011753.1-201ENST00000451001 220 ntBASIC2.03□□□□□ -2.08
PRKNO60260 AC007395.1-201ENST00000451333 677 ntBASIC2.03□□□□□ -2.08
PRKNO60260 PCNPP5-201ENST00000452246 481 ntBASIC2.03□□□□□ -2.08
PRKNO60260 AC067942.3-201ENST00000512025 362 ntBASIC2.03□□□□□ -2.08
PRKNO60260 MTCO2P24-201ENST00000515611 426 ntBASIC2.03□□□□□ -2.08
PRKNO60260 SNORA40.9-201ENST00000515895 93 ntBASIC2.03□□□□□ -2.08
PRKNO60260 RNU6-344P-201ENST00000516635 111 ntBASIC2.03□□□□□ -2.08
PRKNO60260 RNU6-635P-201ENST00000516651 102 ntBASIC2.03□□□□□ -2.08
PRKNO60260 AC022616.8-201ENST00000533569 253 ntBASIC2.03□□□□□ -2.08
PRKNO60260 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC2.03□□□□□ -2.08
PRKNO60260 AC008269.2-201ENST00000561915 1105 ntBASIC2.03□□□□□ -2.08
PRKNO60260 MIR5694-201ENST00000581190 76 ntBASIC2.03□□□□□ -2.08
PRKNO60260 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.03□□□□□ -2.08
PRKNO60260 SNORD11B-201ENST00000607707 90 ntBASIC2.03□□□□□ -2.08
PRKNO60260 AC245884.12-201ENST00000615364 59 ntBASIC2.03□□□□□ -2.08
PRKNO60260 AC009831.4-201ENST00000620744 325 ntBASIC2.03□□□□□ -2.08
PRKNO60260 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.03□□□□□ -2.08
PRKNO60260 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
PRKNO60260 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.03□□□□□ -2.08
PRKNO60260 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
PRKNO60260 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.02□□□□□ -2.09
PRKNO60260 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
PRKNO60260 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.02□□□□□ -2.09
PRKNO60260 RNU6-545P-201ENST00000362681 104 ntBASIC2.02□□□□□ -2.09
PRKNO60260 RNU6-238P-201ENST00000363313 106 ntBASIC2.02□□□□□ -2.09
PRKNO60260 Y_RNA.439-201ENST00000384119 94 ntBASIC2.02□□□□□ -2.09
PRKNO60260 RNU6-574P-201ENST00000384265 107 ntBASIC2.02□□□□□ -2.09
PRKNO60260 RNU6-1026P-201ENST00000384465 108 ntBASIC2.02□□□□□ -2.09
PRKNO60260 MIR561-201ENST00000385216 97 ntBASIC2.02□□□□□ -2.09
PRKNO60260 AL079342.1-201ENST00000401460 267 ntBASIC2.02□□□□□ -2.09
PRKNO60260 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
PRKNO60260 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.02□□□□□ -2.09
PRKNO60260 ATP5EP1-201ENST00000510257 156 ntBASIC2.02□□□□□ -2.09
PRKNO60260 HMGB3P3-201ENST00000510526 400 ntBASIC2.02□□□□□ -2.09
PRKNO60260 RNA5SP82-201ENST00000516707 92 ntBASIC2.02□□□□□ -2.09
PRKNO60260 SNORA40.15-201ENST00000516884 107 ntBASIC2.02□□□□□ -2.09
PRKNO60260 RNU6-897P-201ENST00000517135 105 ntBASIC2.02□□□□□ -2.09
PRKNO60260 RPL17P51-201ENST00000605218 238 ntBASIC2.02□□□□□ -2.09
PRKNO60260 Y_RNA.772-201ENST00000606692 102 ntBASIC2.02□□□□□ -2.09
PRKNO60260 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.02□□□□□ -2.09
PRKNO60260 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.02□□□□□ -2.09
PRKNO60260 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.01□□□□□ -2.09
PRKNO60260 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.01□□□□□ -2.09
PRKNO60260 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
PRKNO60260 RNU6-961P-201ENST00000363893 105 ntBASIC2.01□□□□□ -2.09
PRKNO60260 RNU6-1305P-201ENST00000364353 104 ntBASIC2.01□□□□□ -2.09
PRKNO60260 RNU6-196P-201ENST00000384315 107 ntBASIC2.01□□□□□ -2.09
PRKNO60260 MIR524-201ENST00000385242 87 ntBASIC2.01□□□□□ -2.09
PRKNO60260 MRPL35P1-201ENST00000404272 572 ntBASIC2.01□□□□□ -2.09
PRKNO60260 RNU2-20P-201ENST00000410425 191 ntBASIC2.01□□□□□ -2.09
PRKNO60260 RNA5SP504-201ENST00000410676 117 ntBASIC2.01□□□□□ -2.09
PRKNO60260 ELOCP20-201ENST00000422460 345 ntBASIC2.01□□□□□ -2.09
PRKNO60260 AC073910.1-201ENST00000445047 438 ntBASIC2.01□□□□□ -2.09
PRKNO60260 AL139109.1-201ENST00000455491 297 ntBASIC2.01□□□□□ -2.09
PRKNO60260 AC018868.1-201ENST00000491307 315 ntBASIC2.01□□□□□ -2.09
PRKNO60260 RNU6-408P-201ENST00000515910 100 ntBASIC2.01□□□□□ -2.09
PRKNO60260 RNY3P15-201ENST00000516297 97 ntBASIC2.01□□□□□ -2.09
PRKNO60260 SNORA31.11-201ENST00000516528 139 ntBASIC2.01□□□□□ -2.09
PRKNO60260 RNU6-107P-201ENST00000516643 102 ntBASIC2.01□□□□□ -2.09
PRKNO60260 RNU6-667P-201ENST00000517186 102 ntBASIC2.01□□□□□ -2.09
PRKNO60260 MIR4648-201ENST00000580107 72 ntBASIC2.01□□□□□ -2.09
PRKNO60260 PRR13P7-201ENST00000605538 430 ntBASIC2.01□□□□□ -2.09
PRKNO60260 MIR6895-201ENST00000613497 78 ntBASIC2.01□□□□□ -2.09
PRKNO60260 AC010205.1-201ENST00000616668 449 ntBASIC2.01□□□□□ -2.09
PRKNO60260 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.01□□□□□ -2.09
PRKNO60260 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
PRKNO60260 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.01□□□□□ -2.09
PRKNO60260 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2□□□□□ -2.09
PRKNO60260 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2□□□□□ -2.09
PRKNO60260 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2□□□□□ -2.09
PRKNO60260 Y_RNA.47-201ENST00000362697 108 ntBASIC2□□□□□ -2.09
PRKNO60260 Y_RNA.143-201ENST00000363520 106 ntBASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms